Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18890 426 / 3e-142 AtTic62 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G34460 127 / 1e-32 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G46780 75 / 6e-14 PTAC16 plastid transcriptionally active 16 (.1) AT4G31530 70 / 1e-12 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G37660 66 / 2e-11 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G02240 63 / 7e-11 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G18660 52 / 1e-06 PCB2, DVR PALE-GREEN AND CHLOROPHYLL B REDUCED 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042346 [exp] 915 / 0 AT3G18890 483 / 2e-164 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004936 [exp] 119 / 2e-29 AT2G34460 399 / 4e-141 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040884 [exp] 116 / 1e-28 AT2G34460 401 / 7e-142 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040768 [exp] 87 / 8e-18 AT3G46780 540 / 0.0 plastid transcriptionally active 16 (.1) Lus10016502 [exp] 86 / 2e-17 AT3G46780 533 / 0.0 plastid transcriptionally active 16 (.1) Lus10022420 [exp] 68 / 6e-12 AT4G31530 415 / 4e-146 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10024383 [exp] 67 / 1e-11 AT2G37660 458 / 1e-163 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10010846 [exp] 67 / 1e-11 AT2G37660 451 / 2e-160 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10009715 [exp] 66 / 2e-11 AT4G31530 408 / 1e-144 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T124404 [exp] 498 / 4e-171 AT3G18890 541 / 0.0 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G111323 [exp] 498 / 4e-171 AT3G18890 541 / 0.0 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G150300 [exp] 488 / 4e-168 AT3G18890 481 / 1e-164 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.011G079600 [exp] 114 / 5e-28 AT2G34460 370 / 6e-130 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G037000 [exp] 94 / 3e-20 AT3G46780 503 / 2e-175 plastid transcriptionally active 16 (.1) Potri.001G244800 [exp] 91 / 5e-19 AT3G46780 513 / 7e-179 plastid transcriptionally active 16 (.1) Potri.001G253900 [exp] 70 / 9e-13 AT4G31530 399 / 1e-139 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.006G086800 [exp] 64 / 6e-11 AT2G37660 450 / 2e-160 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G204900 [exp] 51 / 2e-06 AT5G18660 610 / 0.0 PALE-GREEN AND CHLOROPHYLL B REDUCED 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF05368 [flax] [poplar] NmrA NmrA-like family
Representative CDS sequence Show only first row Show all	>Lus10026321 pacid=23156491 polypeptide=Lus10026321 locus=Lus10026321.g ID=Lus10026321.BGIv1.0 annot-version=v1.0 ATGGATGCTTGCCATCTTCATTCATCCGCCATTCCCACCTCTTTTAACAATATCACTCCCGCCAAAACCTTTTCCCTTGCTCAGTCCCTCTCTCTTCCGA ATTTGAACAAGTACCCTCATCCTGCAAAGTTCAGAATTCTCAACACCAAAGTTAAAGCTTCAGGTAGGGTTTCAGCCCACTCTTGCATTTCCATCCTCTT GGAGGTCAAGAACTGGGTAGTGAAATCTGGTACGCTAAGAATCAGGGCGGTGGCGGTTGAGGCAGGTAATGAGGGAGATGGGAAAAGTGAGAATGTAGCT TTTGTGGCAGGTGCTACTGGTAAAGTTGGCTCTCGGACAGTAAGGGAGCTAGTCAAATTGGGGTTCCAAGTTAGAGCTGGTGTCAGGAGTGCTCAAAGAG CTCAAAGTCTTGTCCAGAGTGTGAAGCAAATGAGACTTGATGATGAGGGTTGTCAAGCCACGGACCGACTTCAACTAGTGGAATGTGATTTGGAGAAGCC GGACCAGATTGTACCGGCATTAGGCAATGCATCCGTGGTTCTGTGCTGCATTGGAGCGAGTGAGAAGGAAGTTCTTGACATCACAGGTCCATACCGGATT GATTTCCAAGCTACAAAGAACCTCATTGATGCAGCGATTGTTGCTAAAGTTGATCACTTTATCATGGTCTCCTCATTGGGGACGAACAAAATCGGATTCC CAGCTGCAATCCTGAACTTGTTCTGGGGAGTCCTCATATGGAAGAGGAAGGCAGAAGAAGCACTGATAGCTAGTGATCTTCCTTACACTATAGTCAGACC TGGAGGAATGGAACGGCCAACTGATGCTTACAAGGAGACCCATAACGTTACCCTTTCAACTGAAGACACTTTATTTGGGGGTCAGGTTTCGAATCTTCAG GTGGCAGAACTGATAGCATTCATGGCTAGAAATCAGGGGCGTTCATATTGTAAAGTGGTTGAAGTGATAGCAGAAACAACTGCACCATTGACTCCTTTTG ATAAACTTCTCGAAAAGATACCATCTCAACGAGTTAAACCAAAGAAACCAGATGCATCTCCTACATCTCAGGCTACTACTTTAGAGAAGAAGCTGGAGAA GGTGGCAACTCCTCCAGATGTGAAATCTCCTGAACCAGAGCCTGCACAAACAAGGCCACTCTCACCTTACTCTGCGTACGATGATTTGAAGCCACCTACT TCTCCTAGTCCATCAGCTCCTAGCATCCCCAAGATTCCATCCGAACCTGCTAGTGACACTGTTAGTGCAGAATCTGCCTCGGTAGAAGCAAAAGCATCTA GCTTTCTTTCTCCATATGCTGCCTATGAGGATCTGAAACCACCTAGCTCCCCTTGTCCAACACCGCCAATCAGCTCCAAACCATCTGAGCCTGCACTGCC AGTTGAACCAGCAGCGGGAAATGATATACCAAAGGTTGTCGCTAGTGACATCGATGTCGGACAAAGCATAGAGGAAAAAGTTGTTAACTCGTACCGATCA CCATACTATGTATACGATGCATTCAAGCCACCGGCATCCCCATCTCCGACCCCGCCATCTACCATGAAAGGAGGAGCAACTCAGGAGAAAGATACAATAC CTCCACCACCACCACCAGCAGTAATGAATGAGCAGCACAAGGAGCATAAAGAGGAGGTGGAGAAACCAAGGCCTCTTTCGCCTTATTTCATGTATGAAGA TATGAAGCCTCCAACATCCCCGTCACCTGTCAAATCGGCAGCAAAATGA
AA sequence Show only first row Show all	>Lus10026321 pacid=23156491 polypeptide=Lus10026321 locus=Lus10026321.g ID=Lus10026321.BGIv1.0 annot-version=v1.0 MDACHLHSSAIPTSFNNITPAKTFSLAQSLSLPNLNKYPHPAKFRILNTKVKASGRVSAHSCISILLEVKNWVVKSGTLRIRAVAVEAGNEGDGKSENVA FVAGATGKVGSRTVRELVKLGFQVRAGVRSAQRAQSLVQSVKQMRLDDEGCQATDRLQLVECDLEKPDQIVPALGNASVVLCCIGASEKEVLDITGPYRI DFQATKNLIDAAIVAKVDHFIMVSSLGTNKIGFPAAILNLFWGVLIWKRKAEEALIASDLPYTIVRPGGMERPTDAYKETHNVTLSTEDTLFGGQVSNLQ VAELIAFMARNQGRSYCKVVEVIAETTAPLTPFDKLLEKIPSQRVKPKKPDASPTSQATTLEKKLEKVATPPDVKSPEPEPAQTRPLSPYSAYDDLKPPT SPSPSAPSIPKIPSEPASDTVSAESASVEAKASSFLSPYAAYEDLKPPSSPCPTPPISSKPSEPALPVEPAAGNDIPKVVASDIDVGQSIEEKVVNSYRS PYYVYDAFKPPASPSPTPPSTMKGGATQEKDTIPPPPPPAVMNEQHKEHKEEVEKPRPLSPYFMYEDMKPPTSPSPVKSAAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18890		AtTic62	translocon at the inner envelo...		Lus10026321 [exp]	0	1
AT1G32080		AtLrgB	membrane protein, putative (.1...		Lus10012137 [exp]	2.4	0.9353
AT1G32080		AtLrgB	membrane protein, putative (.1...		Lus10010412 [exp]	2.4	0.9563
AT4G21445			unknown protein		Lus10018419 [exp]	2.4	0.9261
AT5G58140		NPL1, PHOT2	NON PHOTOTROPIC HYPOCOTYL 1-LI...		Lus10013856 [exp]	3.0	0.9202
AT3G08010		ATAB2	RNA binding (.1)		Lus10029507 [exp]	3.2	0.9471
AT4G39970			Haloacid dehalogenase-like hyd...		Lus10023149 [exp]	6.3	0.9320
AT5G42070			unknown protein		Lus10032408 [exp]	8.9	0.9177
AT1G07110		FKFBP, ATF2KP, ...	"fructose-2,6-bisphosphatase",...		Lus10031299 [exp]	9.2	0.9100
AT3G54050		HCEF1	high cyclic electron flow 1 (....		Lus10017195 [exp]	9.2	0.9342
AT1G26220			Acyl-CoA N-acyltransferases (N...		Lus10029099 [exp]	10.0	0.9048

Compare expression of checked genes

Lus10026321 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.