Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34350 760 / 0 HDR, CLB6, ISPH CHLOROPLAST BIOGENESIS 6, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042345 [exp] 885 / 0 AT4G34350 713 / 0.0 CHLOROPLAST BIOGENESIS 6, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (.1) Lus10040509 [exp] 840 / 0 AT4G34350 750 / 0.0 CHLOROPLAST BIOGENESIS 6, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (.1) Lus10011310 [exp] 836 / 0 AT4G34350 743 / 0.0 CHLOROPLAST BIOGENESIS 6, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (.1) Lus10009762 [exp] 173 / 4e-52 AT4G34350 124 / 6e-34 CHLOROPLAST BIOGENESIS 6, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T124604 [exp] 821 / 0 AT4G34350 736 / 0.0 CHLOROPLAST BIOGENESIS 6, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (.1) Potri.009G111569 [exp] 821 / 0 AT4G34350 736 / 0.0 CHLOROPLAST BIOGENESIS 6, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (.1) Potri.004G150400 [exp] 747 / 0 AT4G34350 682 / 0.0 CHLOROPLAST BIOGENESIS 6, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02401 [flax] [poplar] LYTB LytB protein
Representative CDS sequence Show only first row Show all	>Lus10026322 pacid=23156609 polypeptide=Lus10026322 locus=Lus10026322.g ID=Lus10026322.BGIv1.0 annot-version=v1.0 ATGGCGACCTCTTTTCAATTCTCCCGACTCTCCTTTCGCGCTGACCAATTCACATCCCAGCATCGCGGAGTTTTTCGGCGCCCAAGGACTCCAGCTTCCG TCCGATGCTCCGGTGGTGGAGACGAATCCGCTGCTGGCTCATTGGTTGTGGAATCCGACTTCGACTCCAAGGTGTTTAGGCACAACTTGACAAGGAGTAA GAATTACAATCGCCGAGGATTTGGACATAAAGAGGAGACTCTCCAGCTCATGAATCGGGAATATACCAGTGACATCATAAAGACATTGAAGGATAACGGA TACGAGTACACTTGGGGAAATGTTACTGTTAAGCTAGCTGAAGCTTTTGGCTTTTGCTGGGGAGTTGAACGGGCTGTCCAGATTGCGTATGAAGCTAGGA AGCAGTTTCCCGATGAGAAGATTTGGATCACCAACGAGATTATTCACAACCCTACTGTTAATAAGCGTTTGGAGGATATGCAAGTTGCAAATATTCCTAT TGAGGAAGGGGAGAAACAGTTTGAAGTTGTGAACAATGGAGATGTGGTGATTTTGCCTGCTTTTGGGGCATCAGTTGATGAGATGTTGACACTCAGCAAC AAAAATGTGCAAATCGTTGATACTACTTGCCCGTGGGTGTCTAAGGTTTGGAACATTGTTGATAAACATAAAAAGGGGGAGTATACTTCAATCATCCATG GAAAATATACTCATGAGGAAACTATCGCCACTGCTTCTTTTGCTGGGAAATATATCATTGTGAAGGATATCAAAGAGGCAACCTACGTGTGTGATTATAT TCTTGGAGGACAACTCAATGAATCTAGCTCAACCAAAGAGGAGTTTCTGGAGAAATTTAAGTATGCAGTTTCTGAGGGATTTGATCCTGATAGAGACCTT GTTAAAGTTGGTATTGCAAACCAAACTACAATGCTCAAGGGAGAAACTGAAGAAATTGGAAAATTAGCGGAGAGGACCATGATGCAGAAGTATGGAGTTG AAAACGTCAACGATCACTTCATTAGCTTCAACACAATCTGCGATGCTACTCAGGAGAGACAAGACGCAATGTACAAAATGGTGGACGAAAAATTGGACCT TATTCTAGTGGTAGGTGGATGGAACTCAAGCAACACCTCGCATCTACAAGAAATTGCCGAACACCGCGGAATCCCTTCATACTGGATTGACAGTGAACAG AGAATAGGTCCAGGAAACAAGATAGCCTACAAGTTAAACCACGGGGAGTTGGTGGAGAAAGAGAAGTGGTTACCAGAAGGACCGATTACCGTTGGGATAA CATCTGGTGCTTCCACCCCAGATAAGGTGGTGGAGGATGTTCTGACCAAGGTTTTCGACATCAAGCGCGAGGAAGCGTTGCAGGTGGTGTAG
AA sequence Show only first row Show all	>Lus10026322 pacid=23156609 polypeptide=Lus10026322 locus=Lus10026322.g ID=Lus10026322.BGIv1.0 annot-version=v1.0 MATSFQFSRLSFRADQFTSQHRGVFRRPRTPASVRCSGGGDESAAGSLVVESDFDSKVFRHNLTRSKNYNRRGFGHKEETLQLMNREYTSDIIKTLKDNG YEYTWGNVTVKLAEAFGFCWGVERAVQIAYEARKQFPDEKIWITNEIIHNPTVNKRLEDMQVANIPIEEGEKQFEVVNNGDVVILPAFGASVDEMLTLSN KNVQIVDTTCPWVSKVWNIVDKHKKGEYTSIIHGKYTHEETIATASFAGKYIIVKDIKEATYVCDYILGGQLNESSSTKEEFLEKFKYAVSEGFDPDRDL VKVGIANQTTMLKGETEEIGKLAERTMMQKYGVENVNDHFISFNTICDATQERQDAMYKMVDEKLDLILVVGGWNSSNTSHLQEIAEHRGIPSYWIDSEQ RIGPGNKIAYKLNHGELVEKEKWLPEGPITVGITSGASTPDKVVEDVLTKVFDIKREEALQVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34350		HDR, CLB6, ISPH	CHLOROPLAST BIOGENESIS 6, 4-hy...		Lus10026322 [exp]	0	1
AT4G31870		ATGPX7	glutathione peroxidase 7 (.1)		Lus10003421 [exp]	2.0	0.9216
AT4G34350		HDR, CLB6, ISPH	CHLOROPLAST BIOGENESIS 6, 4-hy...		Lus10042345 [exp]	4.5	0.9270
AT1G64680			unknown protein		Lus10001667 [exp]	7.1	0.9260
AT4G03410			Peroxisomal membrane 22 kDa (M...		Lus10018568 [exp]	7.4	0.9093
AT3G10130			SOUL heme-binding family prote...		Lus10022712 [exp]	7.5	0.9052
AT5G57040			Lactoylglutathione lyase / gly...		Lus10017158 [exp]	8.4	0.9216
AT5G13720			Uncharacterised protein family...		Lus10019743 [exp]	9.0	0.9164
AT5G19855		AtRbcX2	homologue of cyanobacterial Rb...		Lus10002563 [exp]	9.8	0.9164
AT1G68660			Ribosomal protein L12/ ATP-dep...		Lus10041479 [exp]	9.8	0.9073
AT1G73885			unknown protein		Lus10005112 [exp]	11.6	0.9222

Compare expression of checked genes

Lus10026322 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.