Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47530 526 / 0 MATE efflux family protein (.1) AT3G26590 488 / 8e-170 MATE efflux family protein (.1) AT5G38030 472 / 2e-163 MATE efflux family protein (.1) AT1G12950 472 / 4e-163 RSH2 root hair specific 2 (.1) AT1G23300 468 / 1e-161 MATE efflux family protein (.1) AT4G00350 453 / 2e-155 MATE efflux family protein (.1) AT4G25640 422 / 7e-144 FFT, ATDTX35 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) AT1G61890 413 / 3e-140 MATE efflux family protein (.1) AT1G11670 405 / 3e-137 MATE efflux family protein (.1) AT3G21690 401 / 2e-135 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042344 [exp] 984 / 0 AT1G47530 521 / 0.0 MATE efflux family protein (.1) Lus10042343 [exp] 640 / 0 AT1G47530 486 / 8e-170 MATE efflux family protein (.1) Lus10036854 [exp] 507 / 1e-176 AT3G26590 666 / 0.0 MATE efflux family protein (.1) Lus10042130 [exp] 502 / 3e-175 AT1G47530 704 / 0.0 MATE efflux family protein (.1) Lus10006206 [exp] 501 / 3e-174 AT3G26590 664 / 0.0 MATE efflux family protein (.1) Lus10010035 [exp] 486 / 2e-169 AT1G47530 665 / 0.0 MATE efflux family protein (.1) Lus10006205 [exp] 473 / 1e-163 AT3G26590 686 / 0.0 MATE efflux family protein (.1) Lus10036851 [exp] 467 / 3e-161 AT3G26590 675 / 0.0 MATE efflux family protein (.1) Lus10039263 [exp] 454 / 1e-156 AT4G25640 691 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G063500 [exp] 515 / 8e-180 AT3G26590 681 / 0.0 MATE efflux family protein (.1) Potri.008G187100 [exp] 478 / 2e-165 AT3G26590 661 / 0.0 MATE efflux family protein (.1) Potri.012G144900 [exp] 455 / 2e-156 AT4G25640 574 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Potri.015G147600 [exp] 453 / 7e-156 AT4G25640 523 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Potri.002G102100 [exp] 434 / 2e-148 AT5G65380 636 / 0.0 MATE efflux family protein (.1) Potri.007G010200 [exp] 423 / 2e-144 AT5G65380 696 / 0.0 MATE efflux family protein (.1) Potri.002G161200 [exp] 421 / 2e-144 AT4G00350 657 / 0.0 MATE efflux family protein (.1) Potri.013G069700 [exp] 422 / 8e-144 AT1G33110 655 / 0.0 MATE efflux family protein (.1.2) Potri.011G002200 [exp] 416 / 4e-141 AT1G11670 669 / 0.0 MATE efflux family protein (.1) Potri.011G002800 [exp] 412 / 6e-140 AT3G21690 656 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10026323 pacid=23156398 polypeptide=Lus10026323 locus=Lus10026323.g ID=Lus10026323.BGIv1.0 annot-version=v1.0 ATGGAGATGGAATTGTCCTCTGTTCCTCCTGCAGATGGGAGAATTTCTCCGAAACCCAGTTCCAGAATGTGGTGGGTGGAGTCCAAGAACATGTGGGAAA TAGCTGCCCCTGCTATGATCACAGAGGTCTCCCAATTCTCTATCAGCTTCATCACCGCCGCATTCGTCGGCCACTTGGGCGCCGTCGAGCTAGCTGCTGT CTCCATCGTTCAGAATGTCCTTGAAACTTTTGTCTTTGGATTCATGTTGGGGATGGGGAGTGCCCTTGAGACGTTATGTGGCCAAGCAGTGGGAGCAGGA CAACTGGACATGCTTGGAGTATATATGCAGAGATCATGGATTATAAGCATGGTTACAGCTTTCTGCCTTGCTCCAGTCTACGCATTGGCATCCCCAATCT TGAAGCTTCTTCATCAAGACAAGCATATCTCCGAACTCGCTGGAAAATTTGCCATATGGGTTATGCCACAATTGTTCCTCTACGCCCTCAACTTCCCCTT ACAGAAATTCCTCCAAGCCCAGAGTAAAGTCTGGGTCTTGACCACCATTTCTGGAGTGGTGCTGGGAATCCATGCACTACTCAATTGGGTTTTCGTCACT AAGCTTGGATATGGGATTGTTGGAGCAGCCATTGTAGCTGACTTCTCCTGGCTGCTGGTGGTTCTTGGACAGATTATATATGTAGTTTCTGGATATTTCC CTCAGGCTTGGACTGGGTTTTCGTGGAAGGCTTTTAAGTCGCTTGGTGGCTTTGTCAAGTTGTCACTTGCTTCTGCAATCATGTTGTGCTTGGAGCTGTG GTACACCACGGTGGTTATTCTCATGGTTGGATGGTTGAAGAACCCCGAAATCGCGGTTGATGCCATCTCGATCTGCATGAACATCCAGCTCTGGACTTTG ATGGTTGCTTTGGGATTCAATGCAGCAATAAGTGTGCGAGTATCGAACGAACTCGGAGCAGGAAATCATAAAGCTGCGAAATTCTCGGTGAAGTTGACCA TTGCAACATCAACAGTAATAGGAGTAATATTCACAGGGATAGTTCTAGCTACAAAGGATGAGTTCCCAAAGCTCTTCACTAAAAACCCTGAGGTGATACA TGAGGCCTCGAAGCTTGGCAACTTCTTAGCAGCCACAATCTTCCTTAACAGCATCCTGCCGGTGCTCCATGGAGTGGCGGTTGGAGCAGGATGGCAGTTC CAGGTTGCACTGATAAACATAGTGTGTTACTATGTGTTTGGGCTGCCAATAGGAGCAGTGCTGGGTTACAAGTACGACCTTGGGGTGAAAGGAATATGGT CAGGAATGTTGATTGGCTACTGTCTGCAGATTGTCTTCCTGCTTTACATTATCTACAAAACCAACTGGCAGAAAGAGGCGTCAGATGCGGAGGAGCGGGT TAGAAACTGGGGAGGGAATTCTGAGCCAAAGCAGATTGGACCATCAGAAGAAGAAGAAGCAACAAGAGCTAATGGCTTGAAAGAAGGAGAAACTTTGATA AGTTAA
AA sequence Show only first row Show all	>Lus10026323 pacid=23156398 polypeptide=Lus10026323 locus=Lus10026323.g ID=Lus10026323.BGIv1.0 annot-version=v1.0 MEMELSSVPPADGRISPKPSSRMWWVESKNMWEIAAPAMITEVSQFSISFITAAFVGHLGAVELAAVSIVQNVLETFVFGFMLGMGSALETLCGQAVGAG QLDMLGVYMQRSWIISMVTAFCLAPVYALASPILKLLHQDKHISELAGKFAIWVMPQLFLYALNFPLQKFLQAQSKVWVLTTISGVVLGIHALLNWVFVT KLGYGIVGAAIVADFSWLLVVLGQIIYVVSGYFPQAWTGFSWKAFKSLGGFVKLSLASAIMLCLELWYTTVVILMVGWLKNPEIAVDAISICMNIQLWTL MVALGFNAAISVRVSNELGAGNHKAAKFSVKLTIATSTVIGVIFTGIVLATKDEFPKLFTKNPEVIHEASKLGNFLAATIFLNSILPVLHGVAVGAGWQF QVALINIVCYYVFGLPIGAVLGYKYDLGVKGIWSGMLIGYCLQIVFLLYIIYKTNWQKEASDAEERVRNWGGNSEPKQIGPSEEEEATRANGLKEGETLI S

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47530			MATE efflux family protein (.1...		Lus10026323 [exp]	0	1
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10011202 [exp]	2.4	0.9439
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10001210 [exp]	7.2	0.9482
AT2G47730		GST6, ATGSTF5, ...	Arabidopsis thaliana glutathio...		Lus10037121 [exp]	10.1	0.9146
AT4G27290			S-locus lectin protein kinase ...		Lus10038552 [exp]	10.2	0.9427
AT5G60600		HDS, ISPG, CSB3...	CONSTITUTIVE SUBTILISIN 3, CHL...		Lus10022583 [exp]	11.7	0.9421
AT2G27030		CAM5, CAM2, ACA...	calmodulin 5 (.1.2.3)		Lus10009176 [exp]	12.5	0.9106
AT5G25930			Protein kinase family protein ...		Lus10012949 [exp]	13.3	0.8899
AT3G48410			alpha/beta-Hydrolases superfam...		Lus10022722 [exp]	13.4	0.9418
AT3G14690		CYP72A15	"cytochrome P450, family 72, s...		Lus10042486 [exp]	15.1	0.9110
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Lus10014498 [exp]	15.3	0.9418

Compare expression of checked genes

Lus10026323 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.