Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18870 279 / 1e-93 Mitochondrial transcription termination factor family protein (.1) AT2G34620 144 / 7e-41 Mitochondrial transcription termination factor family protein (.1) AT2G03050 139 / 5e-39 SOLDAT10, EMB93 SINGLET OXYGEN-LINKED DEATH ACTIVATOR 10, EMBRYO DEFECTIVE 93, Mitochondrial transcription termination factor family protein (.1) AT2G36000 116 / 5e-30 EMB3114 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) AT5G55580 86 / 2e-18 Mitochondrial transcription termination factor family protein (.1) AT1G78930 86 / 2e-18 Mitochondrial transcription termination factor family protein (.1) AT2G21710 84 / 1e-17 EMB2219 embryo defective 2219, Mitochondrial transcription termination factor family protein (.1) AT4G38160 77 / 1e-15 PDE191 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3) AT4G14605 76 / 4e-15 Mitochondrial transcription termination factor family protein (.1) AT2G44020 74 / 2e-14 Mitochondrial transcription termination factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042342 [exp] 595 / 0 AT3G18870 276 / 1e-92 Mitochondrial transcription termination factor family protein (.1) Lus10014567 [exp] 144 / 2e-40 AT2G34620 300 / 6e-101 Mitochondrial transcription termination factor family protein (.1) Lus10032120 [exp] 135 / 2e-37 AT2G34620 300 / 2e-101 Mitochondrial transcription termination factor family protein (.1) Lus10029422 [exp] 128 / 2e-34 AT2G36000 294 / 3e-98 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) Lus10004219 [exp] 123 / 3e-32 AT2G36000 293 / 8e-98 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) Lus10016971 [exp] 122 / 3e-32 AT2G36000 271 / 2e-89 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) Lus10021297 [exp] 121 / 7e-32 AT2G36000 264 / 8e-87 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) Lus10030451 [exp] 115 / 1e-29 AT2G03050 283 / 3e-95 SINGLET OXYGEN-LINKED DEATH ACTIVATOR 10, EMBRYO DEFECTIVE 93, Mitochondrial transcription termination factor family protein (.1) Lus10026612 [exp] 110 / 7e-28 AT2G03050 285 / 4e-96 SINGLET OXYGEN-LINKED DEATH ACTIVATOR 10, EMBRYO DEFECTIVE 93, Mitochondrial transcription termination factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G150600 [exp] 303 / 6e-103 AT3G18870 311 / 1e-106 Mitochondrial transcription termination factor family protein (.1) Potri.011G081400 [exp] 161 / 3e-47 AT2G34620 392 / 5e-138 Mitochondrial transcription termination factor family protein (.1) Potri.016G072200 [exp] 136 / 2e-37 AT2G36000 280 / 1e-92 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) Potri.006G205000 [exp] 132 / 6e-36 AT2G36000 284 / 2e-94 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) Potri.010G167400 [exp] 113 / 3e-29 AT2G03050 303 / 3e-103 SINGLET OXYGEN-LINKED DEATH ACTIVATOR 10, EMBRYO DEFECTIVE 93, Mitochondrial transcription termination factor family protein (.1) Potri.001G361800 [exp] 92 / 1e-20 AT5G55580 584 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.007G001800 [exp] 90 / 1e-19 AT1G78930 633 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.004G209400 [exp] 84 / 3e-18 AT4G38160 481 / 3e-172 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3) Potri.009G170300 [exp] 80 / 1e-16 AT4G38160 479 / 8e-170 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3) Potri.017G067600 [exp] 79 / 3e-16 AT4G14605 571 / 0.0 Mitochondrial transcription termination factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02536 [flax] [poplar] mTERF mTERF
Representative CDS sequence Show only first row Show all	>Lus10026325 pacid=23156414 polypeptide=Lus10026325 locus=Lus10026325.g ID=Lus10026325.BGIv1.0 annot-version=v1.0 ATGCTACACTCACTAACTATCCAAGCTTCCTCCATAACCAGAACCTTCACCAAACACCCACCACCACCACCACCTACTCCATCTCCACACCCTCCCATTC ACATTAACTTCCAAACAACCCGCCGAGAACATCTCCGATACCTCAAATCCATCGGCGTGGTTAGCCCCGACACCAAACTTCACAAGCTCCCATCACCGGA CGCCATCTCCCACATCCTCTCCACCGTGAACTTCTTCAAATCTAAAGGCTTCTCCAACCCCGACTTCCCCAGGCTCGTCTCCGTTTGCCCCGAAATCTTC TCTCCCAACTTCGATGTCTCCGACATTCAACCCGTGTTCGAGTTTCTCGCCATGGATTTGGGGGCCTCGCCCCACCAATCTTGCGGTCTGATCGCAAATT GCCCCGAGATCCTCCTCACCGATGTGGAGTACTGCCTCAAGCCGACGCTGGACTATCTCAGGCATATTGGGGTGGAGAATTTGAATGCTCCTACAATCCT CAACGCCAACCTGTTGAATGTTCGAATCGGGAAGTTGCAGTCGAAGGTGATGTTTCTGAGGAGCATTGGGTTTTCCGAGGAGGAAGCTGAGAAATGCTGT GCGAGGTTGCCTGCCATATTGAAGTACAGCGTTGAGAATAATATGAAGAGGAAGTATGTGTACCTGGTGAAGGAGATGGGACGGAGCGTGGAGGAGTTGA AGGAGTTCCCTCAGTATTTCGGGTTTAGTCTCGAGACGAGGATACACCCGAGGCATGTGTATCTGAAAGCCATGAACGTTAAGGCCAAGCTGGATAGAAT GTTGAAATGTAGCGACGAGAATTTCTACTACCGCTTTTGGGAGAAACCTGGCCTTGCTGGGCGCAACAAATCCAGACATTCTAAGAGGATGAATCCGAGA GGAGAAAAACGCATTTCGACCAATGCTCCGAGTCTGACACTCTGA
AA sequence Show only first row Show all	>Lus10026325 pacid=23156414 polypeptide=Lus10026325 locus=Lus10026325.g ID=Lus10026325.BGIv1.0 annot-version=v1.0 MLHSLTIQASSITRTFTKHPPPPPPTPSPHPPIHINFQTTRREHLRYLKSIGVVSPDTKLHKLPSPDAISHILSTVNFFKSKGFSNPDFPRLVSVCPEIF SPNFDVSDIQPVFEFLAMDLGASPHQSCGLIANCPEILLTDVEYCLKPTLDYLRHIGVENLNAPTILNANLLNVRIGKLQSKVMFLRSIGFSEEEAEKCC ARLPAILKYSVENNMKRKYVYLVKEMGRSVEELKEFPQYFGFSLETRIHPRHVYLKAMNVKAKLDRMLKCSDENFYYRFWEKPGLAGRNKSRHSKRMNPR GEKRISTNAPSLTL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18870			Mitochondrial transcription te...		Lus10026325 [exp]	0	1
AT5G20935			unknown protein		Lus10013382 [exp]	2.4	0.9377
AT3G63140		CSP41A	chloroplast stem-loop binding ...		Lus10014669 [exp]	4.7	0.9461
AT3G21055		PSBTN	photosystem II subunit T (.1)		Lus10027359 [exp]	5.1	0.9445
AT2G36145			unknown protein		Lus10014224 [exp]	5.2	0.9280
AT2G47400		CP12-1	CP12 domain-containing protein...		Lus10025025 [exp]	5.9	0.9326
AT1G51400			Photosystem II 5 kD protein (....		Lus10014908 [exp]	7.5	0.9341
AT1G74070			Cyclophilin-like peptidyl-prol...		Lus10008990 [exp]	7.9	0.9315
AT3G05170			Phosphoglycerate mutase family...		Lus10024659 [exp]	8.7	0.9161
AT1G44920			unknown protein		Lus10007720 [exp]	9.5	0.9204
AT5G67385			Phototropic-responsive NPH3 fa...		Lus10014858 [exp]	9.9	0.9172

Compare expression of checked genes

Lus10026325 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.