Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19360 610 / 0 RRA3 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) AT1G75110 602 / 0 RRA2 REDUCED RESIDUAL ARABINOSE 2, Nucleotide-diphospho-sugar transferase family protein (.1) AT1G75120 515 / 0 RRA1 REDUCED RESIDUAL ARABINOSE 1, Nucleotide-diphospho-sugar transferase family protein (.1) AT1G70630 79 / 1e-15 Nucleotide-diphospho-sugar transferase family protein (.1) AT2G35610 64 / 1e-10 XEG113 xyloglucanase 113 (.1) AT4G19970 50 / 3e-06 unknown protein AT4G01750 47 / 1e-05 RGXT2 rhamnogalacturonan xylosyltransferase 2 (.1) AT5G40900 47 / 2e-05 Nucleotide-diphospho-sugar transferase family protein (.1) AT4G01770 45 / 6e-05 RGXT1 rhamnogalacturonan xylosyltransferase 1 (.1) AT1G14590 44 / 0.0002 Nucleotide-diphospho-sugar transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042340 [exp] 875 / 0 AT1G19360 603 / 0.0 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) Lus10018812 [exp] 626 / 0 AT1G19360 636 / 0.0 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) Lus10032710 [exp] 618 / 0 AT1G19360 629 / 0.0 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) Lus10036860 [exp] 69 / 8e-13 AT1G70630 450 / 2e-157 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10006212 [exp] 67 / 2e-11 AT1G70630 610 / 0.0 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10041976 [exp] 53 / 3e-07 AT1G14590 292 / 4e-96 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10017981 [exp] 52 / 5e-07 AT1G14590 303 / 9e-101 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10041973 [exp] 52 / 7e-07 AT1G14590 302 / 3e-100 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10041977 [exp] 47 / 2e-05 AT1G14590 296 / 9e-98 Nucleotide-diphospho-sugar transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G113300 [exp] 714 / 0 AT1G19360 655 / 0.0 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) Potri.014G042700 [exp] 633 / 0 AT1G19360 635 / 0.0 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) Potri.002G134400 [exp] 617 / 0 AT1G19360 622 / 0.0 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) Potri.008G186800 [exp] 69 / 3e-12 AT1G70630 668 / 0.0 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.004G235800 [exp] 57 / 2e-08 AT2G35610 976 / 0.0 xyloglucanase 113 (.1) Potri.014G051600 [exp] 45 / 5e-05 AT1G28710 344 / 5e-117 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) Potri.002G139800 [exp] 45 / 7e-05 AT1G28710 337 / 1e-114 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) Potri.002G166000 [exp] 44 / 0.0001 AT4G01220 524 / 0.0 male gametophyte defective 4, Nucleotide-diphospho-sugar transferase family protein (.1.2) Potri.012G112600 [exp] 42 / 0.0008 AT1G28710 306 / 6e-104 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) Potri.015G029200 [exp] 42 / 0.0008 AT1G14590 405 / 8e-141 Nucleotide-diphospho-sugar transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF03407 [flax] [poplar] Nucleotid_trans Nucleotide-diphospho-sugar transferase
Representative CDS sequence Show only first row Show all	>Lus10026327 pacid=23156539 polypeptide=Lus10026327 locus=Lus10026327.g ID=Lus10026327.BGIv1.0 annot-version=v1.0 ATGATGGGACAAAGAGAAGGGCCATTGATGAGGAATAGTAGCACCGCAGCCTCCGTCGTCAAATCTAGAATCTCCGTTGCCGTTGCCCTCGGTATCTTAC TCGGTTGCGCTTTCGCTTTCCTCTACCCTCACGGATTCTTCACTTCCGCTACTGCTTCTCGCATCAACACTTCTCTTTCCCAGGTGGTATCATCAGCGTC CTGCGAGCCATCCGACAAGCTCAATGCTTTAAGAGCAGAGTTCGCTGAAGCATCGGAGAAAAACTCCGAGTTGCAGAAACAGGTCAAGGAGCTTACTTCA AAGCTCAGATATGCAGAACAAATCAAAAGCCAAGCAGAAATTCAAGTTGCTATATTGGGTCAGCAGCACAAAGCTGGACCATTTGGTACTGTTAAGGGAC TGAGAACAAACCTTGCAGTAAAACCGGACGAGTCAGTGAACCCGAGGCTGTCAAGTATACTCGAGAAAGTTTCCGTGCAGAAAGAACTCATAGTCGCTTT AGCCAACTCGAACGTGAAGGAAATGCTGGAGGTTTGGTTCACCAGCATCAAGAAAGTCGGCATACCAAACTATTTAGTTGTCGCTCTGGACGATGAGATC GCTCAGCTTTGCGAATTGAACGATGTTCCGTTCTACAAGCGAGATGCTGACGAAGGGGTTGATTCGGTAGGAAAGACAGGAGGCAACCATGCTGTTTCGG GCTTGAAATTCCGAATCTTGAGGGAGTTCTTGCAATTGGGTTACAGCGTTCTTCTGTCCGATGTTGATATCGTGTACCTCCAGAACCCGTTTGATCATCT GTACCGAGATTCCGATGTGGAGTCGATGACCGACGGACACAACAACATGACTGCGTACGGTTACAACGACGTGTTTGACGAGCCATCGATGGGGTGGGCG AGGTACGCTCACACGATGCGAATTTGGGTTTACAACTCCGGATTCTTCTACATCAGACCAACCATTCCGTCGATCGAGCTTTTGGATCGTGTGGCTTATC GGCTGGCCCACGAGACTGCGTGGGATCAGGCGGTGTTCAACGAGGAACTGTTTTACCCGTCTCATCCTGGTTACGATGGACTTTATGCGTCGAGGAGGAC GATGGATTTGTACCTTTTCATGAACAGCAAGGTTTTGTTCAAGACTGTGAGGAAAGATGGTAACCTGAGGAAGGTGAAGCCGGTGATTGTTCATGTGAAT TACCATCCGGATAAGCTTCCGAGAATGAAGGCTGTGGTTGAGTTCTATGTGAATGGGAACCAAGAAGCGCTCAAATCTTTTCCAGATGGATCAGGCAGGT GA
AA sequence Show only first row Show all	>Lus10026327 pacid=23156539 polypeptide=Lus10026327 locus=Lus10026327.g ID=Lus10026327.BGIv1.0 annot-version=v1.0 MMGQREGPLMRNSSTAASVVKSRISVAVALGILLGCAFAFLYPHGFFTSATASRINTSLSQVVSSASCEPSDKLNALRAEFAEASEKNSELQKQVKELTS KLRYAEQIKSQAEIQVAILGQQHKAGPFGTVKGLRTNLAVKPDESVNPRLSSILEKVSVQKELIVALANSNVKEMLEVWFTSIKKVGIPNYLVVALDDEI AQLCELNDVPFYKRDADEGVDSVGKTGGNHAVSGLKFRILREFLQLGYSVLLSDVDIVYLQNPFDHLYRDSDVESMTDGHNNMTAYGYNDVFDEPSMGWA RYAHTMRIWVYNSGFFYIRPTIPSIELLDRVAYRLAHETAWDQAVFNEELFYPSHPGYDGLYASRRTMDLYLFMNSKVLFKTVRKDGNLRKVKPVIVHVN YHPDKLPRMKAVVEFYVNGNQEALKSFPDGSGR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19360		RRA3	reduced residual arabinose 3, ...		Lus10026327 [exp]	0	1
					Lus10027950 [exp]	6.5	0.8424
AT1G11340			S-locus lectin protein kinase ...		Lus10025512 [exp]	9.7	0.8579
AT2G15580			RING/U-box superfamily protein...		Lus10001685 [exp]	11.8	0.8233
AT4G19140			unknown protein		Lus10023813 [exp]	16.7	0.8518
AT1G76880	Trihelix		Duplicated homeodomain-like su...		Lus10018888 [exp]	37.2	0.8417
AT2G41150			unknown protein		Lus10022403 [exp]	48.8	0.8045
AT4G38360		LAZ1	LAZARUS 1, Protein of unknown ...		Lus10022625 [exp]	55.5	0.8076
AT4G33000		SCABP8, ATCBL10...	SOS3-LIKE CALCIUM BINDING PROT...		Lus10037648 [exp]	58.9	0.8190
AT1G05940		CAT9	cationic amino acid transporte...		Lus10042898 [exp]	65.3	0.7977
AT4G38240		GNTI, CGL1	N-ACETYLGLUCOSAMINYLTRANSFERAS...		Lus10001389 [exp]	71.3	0.8218

Compare expression of checked genes

Lus10026327 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.