Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18830 214 / 2e-64 ATPMT5, AtPLT5 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) AT2G16130 206 / 1e-61 ATPMT2, AtPLT2 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 2, polyol/monosaccharide transporter 2 (.1) AT2G16120 206 / 2e-61 ATPMT1, AtPLT1 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 1, polyol/monosaccharide transporter 1 (.1) AT4G36670 177 / 9e-51 AtPMT6, AtPLT6 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) AT2G18480 169 / 1e-47 AtPLT3 Major facilitator superfamily protein (.1) AT2G20780 139 / 2e-36 AtPLT4 Major facilitator superfamily protein (.1) AT3G05150 100 / 4e-23 Major facilitator superfamily protein (.1) AT5G18840 93 / 1e-20 Major facilitator superfamily protein (.1) AT1G08890 93 / 1e-20 Major facilitator superfamily protein (.1) AT2G43330 91 / 6e-20 ATINT1 inositol transporter 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042339 [exp] 315 / 3e-103 AT3G18830 735 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10011288 [exp] 281 / 3e-90 AT3G18830 721 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10040482 [exp] 280 / 4e-90 AT3G18830 722 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10011287 [exp] 238 / 9e-74 AT3G18830 692 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10006971 [exp] 213 / 4e-64 AT3G18830 631 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10034623 [exp] 210 / 4e-63 AT3G18830 652 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10026329 [exp] 196 / 9e-62 AT3G18830 137 / 9e-39 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10035255 [exp] 206 / 1e-61 AT3G18830 656 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10041731 [exp] 190 / 1e-55 AT4G36670 664 / 0.0 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G113600 [exp] 254 / 6e-80 AT3G18830 717 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.004G152300 [exp] 250 / 3e-78 AT3G18830 625 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.004G151725 [exp] 239 / 2e-74 AT3G18830 640 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.007G027900 [exp] 181 / 2e-52 AT4G36670 638 / 0.0 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) Potri.006G158700 [exp] 168 / 1e-47 AT3G18830 477 / 6e-165 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.013G135200 [exp] 142 / 1e-37 AT2G20780 747 / 0.0 Major facilitator superfamily protein (.1) Potri.004G039100 [exp] 140 / 3e-37 AT2G20780 647 / 0.0 Major facilitator superfamily protein (.1) Potri.019G055600 [exp] 97 / 6e-22 AT5G17010 662 / 0.0 Major facilitator superfamily protein (.1.2.3.4) Potri.014G136600 [exp] 90 / 2e-19 AT2G48020 665 / 0.0 Major facilitator superfamily protein (.1.2) Potri.007G126800 [exp] 89 / 4e-19 AT2G43330 710 / 0.0 inositol transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10026328 pacid=23156436 polypeptide=Lus10026328 locus=Lus10026328.g ID=Lus10026328.BGIv1.0 annot-version=v1.0 ATGGCAGGTCCCGACGCTGAGAGGCAGACGACGTCCTCTGCCGCCGCCGCCGAAAACAACAGTAAATTGGCAGACTTTGAAACTCCGGCGAAACCAAAAA CTAACAAGTTCGCTTTCGCTTGTGCCATGTTGGCTTCCATGACTTCCATCTTACTCGGCTACGATATCGGAGTCATGAGCGGAGCCGCCATCTTCATCAA GGACGAATTCAAGATCTCGGACGTCAAAGTCGAGGTGCTGGTCGGAATGCTCAACATATACTCATTGATCGGCTCAGCCGCCGCCGGCAGAACCTCCGAC TGGATCGGACGTCGGTACACCATCGTCGTTGCCGGCGCTATCTTCTTCGTTGGGGCACTCCTGATGGGATTCGCTACAAGCTATGCCTTCCTCATGGTCG GCCGCTTCGTCGCCGGCATTGGCGTCGGCTACGCTCTCATGATTGCCCCTGTCTACACCCCCGAACCCACGGATCTTCGAAAAGGTCGGGATCACATCCT CCGACAAGAAGCTGCTCGCGTCGATTGCCCGGGGATCCACCACGCCGGTATTGCTCCTGGATGCTTCTTCTTCCTCTTTTTGTTGGACAGGATCGGACGG AGGCCGTTGCTCCTGAGCAGCGTGGCCGGGATGATCCTTTCGCTGGTGACCCTTGGATGGAGCCTGGAGATCATAGATCACACGGCTCACAAAGTGAGCT GGGCCGTAGCGCTGTGCATATCGATGGTATTGTCCTACGTGGCGTTCTTCTCGATTGGGATGGGGCCCATCACTTGGGTTTATAGCTCGGAGATTTTCCC CTTGAGGCTACGCGCTCAAGGGGCGAGTATGGGAGTGGCGGTGAACAGAGTGACGAGCGGGGTTATATCGACGACGTTTATATCGATGTACAAAGGGATG ACGATCAGCGGGGCATTCTTCTTGTTTGCCGGCATTGCTATGGTGGCGTTTGTGTTCTTTTTCAGCTGTTATCCGGAGACTCAAGGGAGGACGTTGGAAG ATATGGAGGTGCTGTTTGGTAGCTTCTTCGGATGGAGGTCTGCGGCTCTGGAGGTTGAGAAGTTGAAGGAGAAAGAGGGCAAGAATGGTAATATTAATAG TAACAATGGGGTTGAATTAGGAAGTACATAA
AA sequence Show only first row Show all	>Lus10026328 pacid=23156436 polypeptide=Lus10026328 locus=Lus10026328.g ID=Lus10026328.BGIv1.0 annot-version=v1.0 MAGPDAERQTTSSAAAAENNSKLADFETPAKPKTNKFAFACAMLASMTSILLGYDIGVMSGAAIFIKDEFKISDVKVEVLVGMLNIYSLIGSAAAGRTSD WIGRRYTIVVAGAIFFVGALLMGFATSYAFLMVGRFVAGIGVGYALMIAPVYTPEPTDLRKGRDHILRQEAARVDCPGIHHAGIAPGCFFFLFLLDRIGR RPLLLSSVAGMILSLVTLGWSLEIIDHTAHKVSWAVALCISMVLSYVAFFSIGMGPITWVYSSEIFPLRLRAQGASMGVAVNRVTSGVISTTFISMYKGM TISGAFFLFAGIAMVAFVFFFSCYPETQGRTLEDMEVLFGSFFGWRSAALEVEKLKEKEGKNGNINSNNGVELGST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10026328 [exp]	0	1
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10026329 [exp]	1.0	0.9261
AT5G45800		MEE62	maternal effect embryo arrest ...		Lus10007287 [exp]	1.4	0.8303
AT2G26650		AKT1, ATAKT1	K+ transporter 1, K+ transport...		Lus10019442 [exp]	2.4	0.7997
AT2G38510			MATE efflux family protein (.1...		Lus10025237 [exp]	5.0	0.7808
AT2G23470		RUS4	ROOT UV-B SENSITIVE 4, Protein...		Lus10016778 [exp]	5.3	0.7334
AT1G75820		ATCLV1, FLO5, F...	FLOWER DEVELOPMENT 5, FASCIATA...		Lus10040592 [exp]	5.9	0.7602
					Lus10018645 [exp]	7.4	0.7371
AT4G06536			SPla/RYanodine receptor (SPRY)...		Lus10010241 [exp]	8.8	0.7344
AT2G37710		RLK	receptor lectin kinase (.1)		Lus10035627 [exp]	8.9	0.7877
AT5G63380			AMP-dependent synthetase and l...		Lus10022335 [exp]	11.2	0.7709

Compare expression of checked genes

Lus10026328 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.