Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18830 135 / 4e-38 ATPMT5, AtPLT5 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) AT2G16120 125 / 3e-34 ATPMT1, AtPLT1 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 1, polyol/monosaccharide transporter 1 (.1) AT2G16130 125 / 4e-34 ATPMT2, AtPLT2 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 2, polyol/monosaccharide transporter 2 (.1) AT4G36670 118 / 1e-31 AtPMT6, AtPLT6 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) AT2G18480 118 / 1e-31 AtPLT3 Major facilitator superfamily protein (.1) AT2G20780 93 / 1e-22 AtPLT4 Major facilitator superfamily protein (.1) AT5G59250 69 / 2e-14 Major facilitator superfamily protein (.1) AT4G16480 68 / 9e-14 ATINT4 inositol transporter 4 (.1) AT1G30220 65 / 8e-13 ATINT2 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) AT2G35740 65 / 9e-13 ATINT3 nositol transporter 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026328 [exp] 196 / 4e-62 AT3G18830 219 / 2e-66 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10042339 [exp] 196 / 8e-61 AT3G18830 735 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10011288 [exp] 179 / 2e-54 AT3G18830 721 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10040482 [exp] 179 / 2e-54 AT3G18830 722 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10006971 [exp] 140 / 6e-40 AT3G18830 631 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10011287 [exp] 139 / 2e-39 AT3G18830 692 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10034623 [exp] 136 / 3e-38 AT3G18830 652 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10035255 [exp] 135 / 6e-38 AT3G18830 656 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10041731 [exp] 134 / 1e-37 AT4G36670 664 / 0.0 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G113600 [exp] 165 / 5e-49 AT3G18830 717 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.004G152300 [exp] 159 / 1e-46 AT3G18830 625 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.004G151725 [exp] 150 / 8e-44 AT3G18830 640 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.007G027900 [exp] 124 / 7e-34 AT4G36670 638 / 0.0 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) Potri.006G158700 [exp] 108 / 2e-28 AT3G18830 477 / 6e-165 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.013G135200 [exp] 100 / 2e-25 AT2G20780 747 / 0.0 Major facilitator superfamily protein (.1) Potri.004G039100 [exp] 93 / 1e-22 AT2G20780 647 / 0.0 Major facilitator superfamily protein (.1) Potri.016G010600 [exp] 71 / 1e-14 AT4G16480 825 / 0.0 inositol transporter 4 (.1) Potri.006G015200 [exp] 67 / 3e-13 AT4G16480 811 / 0.0 inositol transporter 4 (.1) Potri.001G244100 [exp] 66 / 3e-13 AT5G59250 598 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10026329 pacid=23156458 polypeptide=Lus10026329 locus=Lus10026329.g ID=Lus10026329.BGIv1.0 annot-version=v1.0 ATGGGGCCCATCACTTGGGTTTATAGCTCGGAGATTTTCCCCTTGAGGCTACGCGCTCAAGGGGCGAGTATGGGAGTGGCGGTGAACAGAGTGACGAGCG GGGTTATATCGACGACGTTTATATCGATGTACAAAGGGATGACGATCAGCGGGGCATTCTTCTTGTTTGCCGGCATTGCTATGGTGGCGTTTGTGTTCTT TTTCAGCTGTTATCCGGAGACTCAAGGGAGGACGTTGGAAGATATGGAGGTGCTGTTTGGTAGCTTCTTCGGATGGAGGTCTGCGGCTCTGGAGGTTGAG AAGTTGAAGGAGAAAGAGGGCAAGAATGGTTGTCCAATGCTTCAGTATTGTCCTGGACTGATTAGTTTAATGATCATCCATGGCATGGACCAACCAAGCA GGACAACAGTTCAGCAACAGCTGCCAGGCAACGCCAGGGAGTGCAGTTATAGTTTTGGATCCACTTCTTTCTAA
AA sequence Show only first row Show all	>Lus10026329 pacid=23156458 polypeptide=Lus10026329 locus=Lus10026329.g ID=Lus10026329.BGIv1.0 annot-version=v1.0 MGPITWVYSSEIFPLRLRAQGASMGVAVNRVTSGVISTTFISMYKGMTISGAFFLFAGIAMVAFVFFFSCYPETQGRTLEDMEVLFGSFFGWRSAALEVE KLKEKEGKNGCPMLQYCPGLISLMIIHGMDQPSRTTVQQQLPGNARECSYSFGSTSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10026329 [exp]	0	1
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10026328 [exp]	1.0	0.9261
AT2G37710		RLK	receptor lectin kinase (.1)		Lus10035627 [exp]	1.4	0.8415
AT2G38510			MATE efflux family protein (.1...		Lus10025237 [exp]	1.7	0.8338
AT5G45800		MEE62	maternal effect embryo arrest ...		Lus10007287 [exp]	4.0	0.8078
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Lus10009412 [exp]	4.5	0.8337
AT2G38710			AMMECR1 family (.1.2)		Lus10042783 [exp]	7.5	0.8109
AT2G26650		AKT1, ATAKT1	K+ transporter 1, K+ transport...		Lus10019442 [exp]	9.5	0.7792
AT2G18660		AtPNP-A, PNP-A,...	plant natriuretic peptide A (....		Lus10019444 [exp]	14.1	0.7626
AT5G63380			AMP-dependent synthetase and l...		Lus10022335 [exp]	17.9	0.7776
AT2G30990			Protein of unknown function (D...		Lus10017644 [exp]	18.2	0.8249

Compare expression of checked genes

Lus10026329 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.