Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15000 433 / 2e-149 SCPL50 serine carboxypeptidase-like 50 (.1) AT3G45010 197 / 2e-57 SCPL48 serine carboxypeptidase-like 48 (.1) AT3G10410 193 / 8e-56 CPY, SCPL49 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) AT5G22980 191 / 6e-55 SCPL47 serine carboxypeptidase-like 47 (.1) AT3G52010 149 / 9e-40 SCPL37 serine carboxypeptidase-like 37 (.1) AT3G52000 145 / 3e-38 SCPL36 serine carboxypeptidase-like 36 (.1) AT2G05850 138 / 9e-36 SCPL38 serine carboxypeptidase-like 38 (.1) AT1G73300 137 / 1e-35 SCPL2 serine carboxypeptidase-like 2 (.1) AT1G73280 133 / 3e-34 SCPL3 serine carboxypeptidase-like 3 (.1) AT2G23010 132 / 8e-34 SCPL9 serine carboxypeptidase-like 9 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042334 [exp] 816 / 0 AT1G15000 439 / 5e-152 serine carboxypeptidase-like 50 (.1) Lus10041000 [exp] 454 / 1e-157 AT1G15000 473 / 2e-165 serine carboxypeptidase-like 50 (.1) Lus10037958 [exp] 191 / 4e-55 AT3G10410 728 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Lus10038691 [exp] 189 / 9e-54 AT3G10410 711 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Lus10041339 [exp] 181 / 4e-51 AT3G45010 657 / 0.0 serine carboxypeptidase-like 48 (.1) Lus10017466 [exp] 179 / 2e-50 AT3G10410 689 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Lus10018667 [exp] 152 / 3e-39 AT1G73280 478 / 2e-153 serine carboxypeptidase-like 3 (.1) Lus10019747 [exp] 140 / 2e-36 AT3G63470 502 / 4e-175 serine carboxypeptidase-like 40 (.1) Lus10025859 [exp] 134 / 5e-34 AT4G12910 694 / 0.0 serine carboxypeptidase-like 20 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G060100 [exp] 553 / 0 AT1G15000 523 / 0.0 serine carboxypeptidase-like 50 (.1) Potri.008G129800 [exp] 523 / 0 AT1G15000 529 / 0.0 serine carboxypeptidase-like 50 (.1) Potri.008G129850 [exp] 513 / 0 AT1G15000 524 / 0.0 serine carboxypeptidase-like 50 (.1) Potri.008G034800 [exp] 196 / 9e-57 AT3G10410 734 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Potri.010G227700 [exp] 195 / 2e-56 AT3G10410 729 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Potri.004G215400 [exp] 187 / 2e-53 AT3G45010 692 / 0.0 serine carboxypeptidase-like 48 (.1) Potri.009G055900 [exp] 144 / 9e-38 AT3G63470 570 / 0.0 serine carboxypeptidase-like 40 (.1) Potri.013G124900 [exp] 140 / 1e-36 AT1G73280 513 / 0.0 serine carboxypeptidase-like 3 (.1) Potri.001G261100 [exp] 135 / 1e-34 AT3G63470 611 / 0.0 serine carboxypeptidase-like 40 (.1) Potri.014G177500 [exp] 130 / 8e-33 AT4G12910 743 / 0.0 serine carboxypeptidase-like 20 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00450 [flax] [poplar] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Lus10026331 pacid=23156529 polypeptide=Lus10026331 locus=Lus10026331.g ID=Lus10026331.BGIv1.0 annot-version=v1.0 ATGGCAACAAAATTTCAACTCTCCATGTCCTATCTCACAATAATAATCTCCTCGTCTTTGATTTCCCAATCCACAGCTTCATCTTCAGAATGCATCACAG GATTACCCAACAAAGCTCTCCCTACTAAATCAGGCTACCTCCCAGTCAACACAGCCACCAACCCATCAGCCATCTTCTACACATATTACAAAGCCCAGCA CCCCCCAAAATCTCGAAACGCCCCGATTCTATTCTGGCTCCAGGGCGGCCCCGGGTGCTCCTCCATGCTCGGAAACTTCTTCGAGCTCGGCCCTTACCGA GTCTCCGAGTGTCAGGACGCGCAGGGTCGAAAGCGTGCCGTTCTGGAACCCAATCCGGGTTCCTGGAACCGCATCTTCGACTTGGTGTTCCTCGATAACC CGATCGGAGCAGGTTTCAGCATTGTTTCCGATCCCGCAGAGATTCCTAAAGACCAGAATTCAGCTGCCAAGCATCTTTACGCTGCCATAACGGGGTTTCT GGGTTTGGAACCCGAGTTCAGGAACCGTCGGGTTTATATTTTAGGCGAGAGCTATGCCGGGAAGTTTGTTCCGTCGATCGGGTACTATATCCTGAAACAG AACGAAAAGGTACCGGTTTCAAAACGGGTGAACCTGAAAGGGATCGGAATCGGGAATGGGATGACCGATCCTGTAATTCAAGTCACTACCCATGCCGCCA GCGCTTACTATCTCGGCTTGATCGACGAAAAGCAGAGGAATCGGATCGAGGAACTTCAATCCAAGGCGGTTAGGTTAGCCGGAATGCAGAAATGGCGCCA GGCAGCAAATGCAAGATCGAGAGTCGTCGGGATGGTGAAAAACCTGACAGGTTTGGCCACCGATTTTGACTTCACTAGAAAAAAGCCATACAGGACCGGT CTGGTGGCTCGATTTCTCCGATCGAAGGGTGTGAAGAGGAAACTCGGAGTGGCTGACGAATCGATCGAGTTCGTCGGGTGCAACAGGACGATCAGGGCTG GGTTCAAGGAAGACGTGATGAAGAGTGCGAAGCGGAAAGTCGAGTTCTTGTTGAAGGGGATGAATAATTGTAAGGTGTTGTTGTATCAGGGGAGTTTGGA TCTGAGGGATAGCGTCGTGCCGAGTGAGGCATGGATTAAGACGATGAAATGGGATGGGATTGAGAAGTTCTTGATGGCTGAAAGGAGGATATGGAGAGTG AAGGGAGAGCTGGCTGGATATGTGCAGAAGTCGGGGAAATTGAGCCATGTTGTGGTGTTGGGTGGTGGGCATATGGATCCTGCTGACCAGGGTATGAATT CACAGTCTATGGTTGAGGATTGGGTGTTGGGGAAAGGGCTCTTTGCTGAAGAACAGGGTAAGGATTTGGCATCAGATTGA
AA sequence Show only first row Show all	>Lus10026331 pacid=23156529 polypeptide=Lus10026331 locus=Lus10026331.g ID=Lus10026331.BGIv1.0 annot-version=v1.0 MATKFQLSMSYLTIIISSSLISQSTASSSECITGLPNKALPTKSGYLPVNTATNPSAIFYTYYKAQHPPKSRNAPILFWLQGGPGCSSMLGNFFELGPYR VSECQDAQGRKRAVLEPNPGSWNRIFDLVFLDNPIGAGFSIVSDPAEIPKDQNSAAKHLYAAITGFLGLEPEFRNRRVYILGESYAGKFVPSIGYYILKQ NEKVPVSKRVNLKGIGIGNGMTDPVIQVTTHAASAYYLGLIDEKQRNRIEELQSKAVRLAGMQKWRQAANARSRVVGMVKNLTGLATDFDFTRKKPYRTG LVARFLRSKGVKRKLGVADESIEFVGCNRTIRAGFKEDVMKSAKRKVEFLLKGMNNCKVLLYQGSLDLRDSVVPSEAWIKTMKWDGIEKFLMAERRIWRV KGELAGYVQKSGKLSHVVVLGGGHMDPADQGMNSQSMVEDWVLGKGLFAEEQGKDLASD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15000		SCPL50	serine carboxypeptidase-like 5...		Lus10026331 [exp]	0	1
AT2G48140		EDA4	embryo sac development arrest ...		Lus10014683 [exp]	1.7	0.9691
AT1G74460			GDSL-like Lipase/Acylhydrolase...		Lus10019095 [exp]	3.5	0.9587
AT1G68850			Peroxidase superfamily protein...		Lus10013065 [exp]	3.5	0.9593
AT5G19410		ABCG23	ATP-binding cassette G23, ABC-...		Lus10008500 [exp]	4.6	0.9461
AT5G58860		CYP86A1	"cytochrome P450, family 86, s...		Lus10040687 [exp]	6.3	0.9500
AT1G64000	WRKY	ATWRKY56, WRKY5...	WRKY DNA-binding protein 56 (....		Lus10036401 [exp]	7.3	0.9483
AT1G68850			Peroxidase superfamily protein...		Lus10029094 [exp]	7.7	0.9499
AT5G58860		CYP86A1	"cytochrome P450, family 86, s...		Lus10018217 [exp]	8.0	0.9426
AT2G40370		LAC5	laccase 5 (.1)		Lus10007531 [exp]	12.2	0.9377
AT1G20160		ATSBT5.2	Subtilisin-like serine endopep...		Lus10032096 [exp]	12.4	0.9328

Compare expression of checked genes

Lus10026331 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.