Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18140 395 / 9e-140 Transducin/WD40 repeat-like superfamily protein (.1.2) AT2G22040 300 / 4e-102 Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 76 / 1e-15 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT2G41500 73 / 1e-14 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT5G08390 72 / 5e-14 Transducin/WD40 repeat-like superfamily protein (.1) AT1G11160 68 / 1e-12 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 67 / 1e-12 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G61210 67 / 2e-12 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G25150 64 / 1e-11 TAF5 TBP-associated factor 5 (.1) AT4G29830 64 / 1e-11 VIP3 vernalization independence 3, Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042333 [exp] 454 / 5e-163 AT3G18140 572 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10014674 [exp] 83 / 2e-18 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 82 / 7e-18 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10021059 [exp] 80 / 1e-16 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10004167 [exp] 77 / 7e-16 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10039636 [exp] 71 / 4e-14 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 71 / 5e-14 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10041007 [exp] 71 / 1e-13 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10013452 [exp] 70 / 3e-13 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G052800 [exp] 430 / 2e-153 AT3G18140 563 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.002G051900 [exp] 75 / 2e-15 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G255400 [exp] 74 / 8e-15 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G002300 [exp] 74 / 1e-14 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G045800 [exp] 72 / 4e-14 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.005G148500 [exp] 68 / 4e-13 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 66 / 2e-12 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G045500 [exp] 66 / 3e-12 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.018G020200 [exp] 66 / 3e-12 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.006G263400 [exp] 63 / 4e-11 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10026332 pacid=23156423 polypeptide=Lus10026332 locus=Lus10026332.g ID=Lus10026332.BGIv1.0 annot-version=v1.0 ATGACACAACCTTCGGTGATACTTGCAACTGCCAGCTATGATCACACGATCAGGTTCTGGGAAGCAAAGAGTGGTCGATGTTACCGTACAATTCAGTACC CTGATTCTCAAGTTAATAGGCTTGAGATAACACCGGATAAGCACTATCTTGCTACGGCTGGTAATCCTCATATTCGATTGTTTGATATCAATTCAAACAG CCCTCAACCGGTGATGAGCTATGATTCACATACAAATAATGTCATGGCAGTGGGCTTTCAATGTGATGGCAACTGGATGTACTCAGGATCTGAAGATGGA ACTGTGAAAATTTGGGACTTGAGGTACAACATGGCCGATGGGGTCCCTGAGGTGGATACAGCGGTAAGATCACTAACAGTTATGTGGGACGGAAGCTTGG TAGTTGCAGCTAACAATAATGGAACATGTTACGTATGGCGCTTGTTGCAAGGAACCCAAACGATGACGAGCTTTGAGCCCCTCCATAAGCTACAAGCACA TAATGGATACATTCTCAAATGTCTATTGTCACCAGAGTTTTGTGAACCTCACAGATATCTGGCTACTGCATCATCAGATCACACTGTCAAGATATGGAAT GTAGATGGTTTCACTTTAGAAAAGACTTTAACGGGTCATCAACGCTGGGTGTGGGACTGTGTTTTCTCCGTGGATGGTGCTTACCTGATAACAGGTCCAT TAAACTGGTTTAATAATAGCAGCCAAGTGAGTGAAACTCTTTCTGGAATGAACAGACAATTTGAACTTCAATGTTAA
AA sequence Show only first row Show all	>Lus10026332 pacid=23156423 polypeptide=Lus10026332 locus=Lus10026332.g ID=Lus10026332.BGIv1.0 annot-version=v1.0 MTQPSVILATASYDHTIRFWEAKSGRCYRTIQYPDSQVNRLEITPDKHYLATAGNPHIRLFDINSNSPQPVMSYDSHTNNVMAVGFQCDGNWMYSGSEDG TVKIWDLRYNMADGVPEVDTAVRSLTVMWDGSLVVAANNNGTCYVWRLLQGTQTMTSFEPLHKLQAHNGYILKCLLSPEFCEPHRYLATASSDHTVKIWN VDGFTLEKTLTGHQRWVWDCVFSVDGAYLITGPLNWFNNSSQVSETLSGMNRQFELQC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22040			Transducin/WD40 repeat-like su...		Lus10026332 [exp]	0	1
AT2G38280		ATAMPD, FAC1	EMBRYONIC FACTOR1, ADENOSINE 5...		Lus10027814 [exp]	5.3	0.8176
AT2G37770		ChlAKR, AKR4C9	Chloroplastic aldo-keto reduct...		Lus10010884 [exp]	10.8	0.7664
AT5G21170		AKINBETA1	5'-AMP-activated protein kinas...		Lus10041287 [exp]	18.3	0.7453
AT3G48360		ATBT2, BT2	BTB and TAZ domain protein 2 (...		Lus10013670 [exp]	21.4	0.7387
AT5G47040		LON2	lon protease 2 (.1)		Lus10040131 [exp]	25.5	0.7392
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10012571 [exp]	29.0	0.7173
AT5G47040		LON2	lon protease 2 (.1)		Lus10001084 [exp]	31.2	0.7367
AT5G14780		FDH	formate dehydrogenase (.1)		Lus10014535 [exp]	32.9	0.7001
AT5G63160		BT1	BTB and TAZ domain protein 1 (...		Lus10033038 [exp]	35.2	0.7092
AT5G22290	NAC	FSQ6, FAN, ANAC...	fructose-sensing quantitative ...		Lus10043402 [exp]	35.2	0.6428

Compare expression of checked genes

Lus10026332 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.