Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34460 566 / 0 ELK4, AGB1, ATAGB1 ERECTA-LIKE 4, GTP binding protein beta 1 (.1.2.3.4) AT4G02730 94 / 5e-21 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT5G67320 86 / 9e-18 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) AT5G25150 86 / 9e-18 TAF5 TBP-associated factor 5 (.1) AT5G52820 82 / 1e-16 WD-40 repeat family protein / notchless protein, putative (.1) AT3G49660 79 / 6e-16 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G13480 79 / 1e-15 FY Transducin/WD40 repeat-like superfamily protein (.1.2) AT3G15980 77 / 1e-14 Coatomer, beta' subunit (.1.2.3.4.5) AT1G52360 76 / 2e-14 Coatomer, beta' subunit (.1.2) AT1G79990 76 / 3e-14 structural molecules (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042325 [exp] 708 / 0 AT4G34460 598 / 0.0 ERECTA-LIKE 4, GTP binding protein beta 1 (.1.2.3.4) Lus10040464 [exp] 644 / 0 AT4G34460 568 / 0.0 ERECTA-LIKE 4, GTP binding protein beta 1 (.1.2.3.4) Lus10023579 [exp] 638 / 0 AT4G34460 590 / 0.0 ERECTA-LIKE 4, GTP binding protein beta 1 (.1.2.3.4) Lus10014674 [exp] 89 / 2e-19 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 87 / 9e-19 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039597 [exp] 82 / 9e-17 AT5G52820 792 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Lus10024447 [exp] 82 / 1e-16 AT5G25150 1006 / 0.0 TBP-associated factor 5 (.1) Lus10029493 [exp] 81 / 2e-16 AT5G52820 786 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Lus10037525 [exp] 81 / 2e-16 AT1G52360 513 / 3e-176 Coatomer, beta' subunit (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G115300 [exp] 637 / 0 AT4G34460 624 / 0.0 ERECTA-LIKE 4, GTP binding protein beta 1 (.1.2.3.4) Potri.004G153700 [exp] 628 / 0 AT4G34460 624 / 0.0 ERECTA-LIKE 4, GTP binding protein beta 1 (.1.2.3.4) Potri.002G051900 [exp] 95 / 2e-21 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G045800 [exp] 89 / 9e-19 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.007G009500 [exp] 76 / 5e-15 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G052700 [exp] 76 / 5e-15 AT1G18080 575 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 75 / 8e-15 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.018G020200 [exp] 76 / 1e-14 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.015G041600 [exp] 74 / 2e-14 AT1G18080 537 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G058000 [exp] 74 / 6e-14 AT5G52820 811 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10026337 pacid=23156500 polypeptide=Lus10026337 locus=Lus10026337.g ID=Lus10026337.BGIv1.0 annot-version=v1.0 ATGTCCGTCGCTGAGCTCAAGGAGCGTCATGTGGCGGCTTCTGACAAGGTCAATACACTCAGGGAACGCTTAAAGCAGAAACGCCTTCAATTGCTCGATA CGGATGTTGCTGGGTATTCCGGAGCTCAGGGGAAGACTCCGGCCACCTTCGGTCCCACCGATCTTGTGTGCTGTCGAACCCTTCAAGGTCATACTGGTAA GGTTTACTCATTGGATTGGACTTCCGAGAAGAACCGGATAGTGAGTGCTTCTCAAGATGGAAGACTAATAGTATGGAATGCTCTAACGAGTCAGAAAACG CATGCTATCAAACTGCCCTGTGCATGGGTCATGACATGTGCCTTCTCTCCCTCCGGACAGTATGTTGCGTGCGGTGGTCTTGATAGTGTCTGCTCCATCT TCAACCTGAACTCCCCACCTGACAAGGACGGGAATTTGGCTGTTTCGAAAATGCTTAGTGGGCATAGAGGTTATGTCTCGTGTTGCCAGTTTGTCCCTGA TGAAGATACTCACCTTATAACTAGTTCAGGTGATCAGACGTGTGTATTATGGGACACCACCACTGGTCTCAGAACTTCTGTCTTTGGTGGAGAATTTCAG TCTGGTCACACTGCTGATGTACTAAGTGTATCAATTAACGGAACAAACTCAAGAATGTTTGTATCCGGTTCTTGTGATGGAACTGCTCGATTATGGGACA CTCGTGTAGCCAGTCGTGCATCTCGTACCTTCTATGGGCATGAGGGAGACGTCAATACCGTGAAGTTCTTTCCAGACGGAAACAGGTTCGGTACTGGTTC TGACGATGGCACGTGCAGGCTATTTGACATCAGGACGGGACATCAGCTGCAAGTGTACTCTCAACAGCAAGGTCAGAATGAAGAAGCAGCGCAAGTGACC TCCATTGCATTCTCTATGTCAGGAAGGCTTCTTATTGCCAGCTACTCAAATGGTGACTGTTGTGTGTGGGATACTCTACTAGCAAGGGTTGTTTTGAACT TAGGGTCACTCCAAAACTCACATGAAGGCCGTATCAGCTGTTTGGGGTTGTCCGGTGATGGAAGCGCCTTATGCACTGGAAGTTGGGATACAAACCTTAA GTGTGCTCTCTACCTCCATCTGGGGGGCCTCCCTGACTATGGTATTTATGCAGATATGGGCATTTGGAGGGCACAGGAGGGTTGTCTGAGTGCAAACGTT ATTGAAGCACAATCTTCTTGTGTAATATTCTCTCAGGGGCTCCTTGAACTTGTATCATTTGGTCGTCACTGGCGTGGATGGGAATGA
AA sequence Show only first row Show all	>Lus10026337 pacid=23156500 polypeptide=Lus10026337 locus=Lus10026337.g ID=Lus10026337.BGIv1.0 annot-version=v1.0 MSVAELKERHVAASDKVNTLRERLKQKRLQLLDTDVAGYSGAQGKTPATFGPTDLVCCRTLQGHTGKVYSLDWTSEKNRIVSASQDGRLIVWNALTSQKT HAIKLPCAWVMTCAFSPSGQYVACGGLDSVCSIFNLNSPPDKDGNLAVSKMLSGHRGYVSCCQFVPDEDTHLITSSGDQTCVLWDTTTGLRTSVFGGEFQ SGHTADVLSVSINGTNSRMFVSGSCDGTARLWDTRVASRASRTFYGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYSQQQGQNEEAAQVT SIAFSMSGRLLIASYSNGDCCVWDTLLARVVLNLGSLQNSHEGRISCLGLSGDGSALCTGSWDTNLKCALYLHLGGLPDYGIYADMGIWRAQEGCLSANV IEAQSSCVIFSQGLLELVSFGRHWRGWE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34460		ELK4, AGB1, ATA...	ERECTA-LIKE 4, GTP binding pro...		Lus10026337 [exp]	0	1
AT3G58100		PDCB5	plasmodesmata callose-binding ...		Lus10002193 [exp]	15.4	0.7644
AT1G50660			unknown protein		Lus10032637 [exp]	32.5	0.7566
AT4G02610			Aldolase-type TIM barrel famil...		Lus10024849 [exp]	56.7	0.7130
AT5G05810		ATL43	RING/U-box superfamily protein...		Lus10023617 [exp]	59.5	0.7192
AT2G16030			S-adenosyl-L-methionine-depend...		Lus10039718 [exp]	119.1	0.7085
AT5G27740		RFC3, EMB251, E...	replication factor C 3, EMBRYO...		Lus10019391 [exp]	122.5	0.7012
AT4G38020			tRNA/rRNA methyltransferase (S...		Lus10025709 [exp]	144.8	0.7077
AT1G12330			unknown protein		Lus10032197 [exp]	158.8	0.6852
AT3G21580		ABCI12	ATP-binding cassette I12, coba...		Lus10001117 [exp]	177.3	0.6754
AT5G48385			FRIGIDA-like protein (.1)		Lus10004132 [exp]	209.4	0.6805

Compare expression of checked genes

Lus10026337 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.