Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34490 633 / 0 ATCAP1 cyclase associated protein 1 (.1) AT4G34500 462 / 1e-156 Protein kinase superfamily protein (.1) AT1G01540 401 / 2e-132 Protein kinase superfamily protein (.1.2) AT4G01330 389 / 1e-127 Protein kinase superfamily protein (.1.2) AT4G02630 378 / 5e-123 Protein kinase superfamily protein (.1) AT3G59110 366 / 3e-118 Protein kinase superfamily protein (.1) AT1G56720 361 / 1e-116 Protein kinase superfamily protein (.1.2.3) AT1G09440 353 / 8e-114 Protein kinase superfamily protein (.1) AT2G42960 350 / 3e-112 Protein kinase superfamily protein (.1) AT5G18500 346 / 4e-111 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042324 [exp] 1399 / 0 AT4G34490 658 / 0.0 cyclase associated protein 1 (.1) Lus10023575 [exp] 732 / 0 AT4G34490 647 / 0.0 cyclase associated protein 1 (.1) Lus10040460 [exp] 719 / 0 AT4G34490 642 / 0.0 cyclase associated protein 1 (.1) Lus10023574 [exp] 451 / 2e-152 AT4G34500 547 / 0.0 Protein kinase superfamily protein (.1) Lus10040459 [exp] 450 / 4e-152 AT4G34500 549 / 0.0 Protein kinase superfamily protein (.1) Lus10024813 [exp] 408 / 3e-134 AT4G02630 632 / 0.0 Protein kinase superfamily protein (.1) Lus10018722 [exp] 406 / 1e-133 AT4G02630 642 / 0.0 Protein kinase superfamily protein (.1) Lus10041593 [exp] 402 / 4e-132 AT4G01330 568 / 0.0 Protein kinase superfamily protein (.1.2) Lus10012664 [exp] 395 / 7e-132 AT4G02630 511 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G115500 [exp] 701 / 0 AT4G34490 665 / 0.0 cyclase associated protein 1 (.1) Potri.004G153900 [exp] 693 / 0 AT4G34490 659 / 0.0 cyclase associated protein 1 (.1) Potri.004G154000 [exp] 478 / 7e-162 AT4G34500 564 / 0.0 Protein kinase superfamily protein (.1) Potri.009G115600 [exp] 473 / 3e-160 AT4G34500 553 / 0.0 Protein kinase superfamily protein (.1) Potri.014G026100 [exp] 410 / 2e-135 AT4G02630 608 / 0.0 Protein kinase superfamily protein (.1) Potri.014G088800 [exp] 397 / 8e-131 AT1G01540 687 / 0.0 Protein kinase superfamily protein (.1.2) Potri.005G139500 [exp] 377 / 2e-123 AT4G02630 477 / 2e-166 Protein kinase superfamily protein (.1) Potri.002G059000 [exp] 372 / 2e-120 AT3G59110 704 / 0.0 Protein kinase superfamily protein (.1) Potri.005G203300 [exp] 368 / 3e-119 AT3G59110 686 / 0.0 Protein kinase superfamily protein (.1) Potri.013G003700 [exp] 365 / 9e-118 AT1G56720 677 / 0.0 Protein kinase superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0391 [flax] [poplar] CAP_C-like PF08603 [flax] [poplar] CAP_C Adenylate cyclase associated (CAP) C terminal CL0391 [flax] [poplar] PF01213 [flax] [poplar] CAP_N Adenylate cyclase associated (CAP) N terminal CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10026338 pacid=23156541 polypeptide=Lus10026338 locus=Lus10026338.g ID=Lus10026338.BGIv1.0 annot-version=v1.0 ATGAATGTACCTTACCAAACATTGCTTTATGGACCCATGGAATTGTTTTTTGGCAGAGGTCAGGCAGGGAGGGAGTTTAAGGTGGAAGTTGAAGCCATTG GCAAAGTAAGGCACAAGAATTTAGTTGGTTTAATTGGTTACTGCGCAGATGGCTCTCGGAGGATGCTTGTCTATGAATACGTTGACAATGGCAATTTAGA GCAGTGGTTACATGGATTTGACGGACCAGTTAGTCCCCTGTCCTGGGATATTCGGATGAAGATCGCCATTGGGACTGCTAAAGGACTAGCCTATTTGCAT GAAGGTTTGGAACCTAAGGTGGTGCATCGCGACGTGAAATCAAGCAACATTCTTCTGGGCAACAAATGGAATGCAAAGGTTTCAGATTTTGGATTGGCCA AGCTACTCGGTTCTGAGTCCAGCTATGTGACTACTCGGGTCATGGGCACTTTCGGATATGTTTCTCCTGATTATGCAAGCACGGGAATGCTTAACGAAGG GAGTGATGTATATAGTTTCGGCGTTCTGCTTATGGAGATTATCACGGGAAGGAGTCCTGTCGATTACACCAGACCAGCTGGCGAGATGAATATGGTAGAT TGGTTCAAGGGAATGGTGGCGAGTCGTAGGGGAGAAGAGCTAGTGGACCCTCTGATTGAGGTTCAGCCTGCTCCGAGAGCTCTGAAAAGAGCGCTGCTGA TTTGTCTGCGATGCATAGATTTGGATGGGAGCAAAAGGCCGAAGATGGGGCAGATTGTTCATATGCTTGAAGCAGACGACTTCCCTTTCCGCGGCCCAAC CATTGCTCCACCACCAGATCTAGCTAGTTCTATCTCACACTTCCACGACCAGAGAGCTCATTCACTGCCTTTCTTCACAGTGTACACGGCGGCGTGGGGA TTTGGCGCCATGGAGGATAAGCTCATAGCTCGGCTGGAATCGGCGGTGGCGCGATTGGAAGCGCTGTCTTCTTCTTCTGGCAGAGACATTGAAGTAGGAG ATGCCTCATCTTCTGATCCCTCCATTCTCGCATTTGATGATCTGATTCGGGAGTCCCTTGGCAAGCTTTCCGCCGCAGCTGACAAGATCGGTGGGCAGGT TCTTGAGGTCACCAAGGTTCTCGGAGAAGCTTTCGGTGTTGAGAAGGAACTTCTCGTCAAGATTAAGCAAACTAAGAAACCCGACATGGCGGGATTTGCT GAGTTCTTGAGGCCTCTCAATGAGGTCATTATGAAAGCAAATGCAATGTCTGAAGGGAGAAGATCGGATTTCTTTAACCACTTGAAGGCTGCCGCTGACA GTCTTTCAGCTTTAGCTTGGATTGCATATACTGGCAAAGATTGCGGTATGAGCATGCCCATTGCACATGTGGAAGAAAGCTGGCAAATGGCAGAATTTTA CTGTAATAAGATCCTTGTTGAATACAAAAGCAAAGACCCAAATCATGTTGAGTGGGCAAAAGCTCTGAAGGGGTTGTACTTGCCAGCTTTGAGAGATTTT GTTAAGAGTCACTATCCGTTGGGTCCAGTATGGAGTGCTACTGGAAAATCTGTGGCCTCTGCTCCAGCCAAAAGTGGTGGAAGAGGTGCTCCTGCTCCTC CACCACCTCCACCAGCTTCTCTATTCAGTGCTGATAATTCTCAGCCTTCATCGTCAAAACCAAAGGAGGGCATGGCTGCGGTTTTCCAAGAAATTAATTC AGGGAAGCCAGTTACTGCAGGTCTGAAGAAGGTGACAGCTGATATGAAATCAAAGAATCGTGCGGATAGAAGTGGGGTTGTTGCTACTAGTGATAAAGGC GCTGCATCTTCACCTTCTTTCTCTAAGACGGGACCTCCAAAGCTTGAGCTTCAAATGGGTCGGAAGTGGGTTGTTGAGAATCAGATTGGAAAAAAGAACT TAGTCATTAGTGACTGTGATGCAAAGCAGTCAGTGTATATGTATGGGTGCAAAGATTCAGTACTGCTGATTCAAGGGAAAGTTAATAATATAACAATCGA CAAGTGCACTAAGTCAGGGGTGGTATTTACGGATGTCGTAGCTGCTTGTGAGGTGGTAAATTGCAGTGGTGTTGAGGTGCAATGTCAGGGTTCAGCTCCA ACAATTTCAGTGGACAATACTGGTGGCTGCCAGTTATATTTGAGCAAATATTCTCTGGAGACGTCCATTACTACAGCAAAGTCTAGTGAGATCAATGTCT TGGTGCCTGGTGAAGAGACCGATGGCGACTTGGTGGAGCATGCGTTACCACAACAGTATATTCATGTGTTCAAGGATGGCAAGTTCGAAACAACTGCTGT ATCCCACTCCGGAGGGTAA
AA sequence Show only first row Show all	>Lus10026338 pacid=23156541 polypeptide=Lus10026338 locus=Lus10026338.g ID=Lus10026338.BGIv1.0 annot-version=v1.0 MNVPYQTLLYGPMELFFGRGQAGREFKVEVEAIGKVRHKNLVGLIGYCADGSRRMLVYEYVDNGNLEQWLHGFDGPVSPLSWDIRMKIAIGTAKGLAYLH EGLEPKVVHRDVKSSNILLGNKWNAKVSDFGLAKLLGSESSYVTTRVMGTFGYVSPDYASTGMLNEGSDVYSFGVLLMEIITGRSPVDYTRPAGEMNMVD WFKGMVASRRGEELVDPLIEVQPAPRALKRALLICLRCIDLDGSKRPKMGQIVHMLEADDFPFRGPTIAPPPDLASSISHFHDQRAHSLPFFTVYTAAWG FGAMEDKLIARLESAVARLEALSSSSGRDIEVGDASSSDPSILAFDDLIRESLGKLSAAADKIGGQVLEVTKVLGEAFGVEKELLVKIKQTKKPDMAGFA EFLRPLNEVIMKANAMSEGRRSDFFNHLKAAADSLSALAWIAYTGKDCGMSMPIAHVEESWQMAEFYCNKILVEYKSKDPNHVEWAKALKGLYLPALRDF VKSHYPLGPVWSATGKSVASAPAKSGGRGAPAPPPPPPASLFSADNSQPSSSKPKEGMAAVFQEINSGKPVTAGLKKVTADMKSKNRADRSGVVATSDKG AASSPSFSKTGPPKLELQMGRKWVVENQIGKKNLVISDCDAKQSVYMYGCKDSVLLIQGKVNNITIDKCTKSGVVFTDVVAACEVVNCSGVEVQCQGSAP TISVDNTGGCQLYLSKYSLETSITTAKSSEINVLVPGEETDGDLVEHALPQQYIHVFKDGKFETTAVSHSGG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34490		ATCAP1	cyclase associated protein 1 (...		Lus10026338 [exp]	0	1
AT1G14020			O-fucosyltransferase family pr...		Lus10026624 [exp]	1.0	0.9457
AT1G51630			O-fucosyltransferase family pr...		Lus10035749 [exp]	1.7	0.9391
AT5G11710			ENTH/VHS family protein (.1)		Lus10007460 [exp]	2.0	0.9355
AT2G20840			Secretory carrier membrane pro...		Lus10018562 [exp]	2.8	0.9405
AT2G40280			S-adenosyl-L-methionine-depend...		Lus10007520 [exp]	3.5	0.9023
AT3G56820			unknown protein		Lus10012105 [exp]	4.4	0.8898
AT4G10840			Tetratricopeptide repeat (TPR)...		Lus10017304 [exp]	5.9	0.9176
AT5G26667		PYR6	P-loop containing nucleoside t...		Lus10031611 [exp]	7.9	0.8870
AT5G52060		ATBAG1	BCL-2-associated athanogene 1 ...		Lus10027420 [exp]	8.2	0.8789
AT2G20840			Secretory carrier membrane pro...		Lus10039794 [exp]	8.5	0.9155

Compare expression of checked genes

Lus10026338 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.