Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19400 188 / 6e-58 Erythronate-4-phosphate dehydrogenase family protein (.1.2) AT1G75180 167 / 6e-50 Erythronate-4-phosphate dehydrogenase family protein (.1.2.3) AT1G01500 116 / 4e-30 Erythronate-4-phosphate dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042323 [exp] 462 / 9e-166 AT1G19400 238 / 3e-77 Erythronate-4-phosphate dehydrogenase family protein (.1.2) Lus10016311 [exp] 191 / 1e-58 AT1G75180 353 / 2e-122 Erythronate-4-phosphate dehydrogenase family protein (.1.2.3) Lus10010803 [exp] 186 / 3e-57 AT1G75180 357 / 1e-123 Erythronate-4-phosphate dehydrogenase family protein (.1.2.3) Lus10005124 [exp] 114 / 1e-29 AT1G01500 360 / 3e-125 Erythronate-4-phosphate dehydrogenase family protein (.1) Lus10007912 [exp] 100 / 5e-24 AT1G01500 350 / 1e-120 Erythronate-4-phosphate dehydrogenase family protein (.1) Lus10036394 [exp] 97 / 3e-23 AT1G01500 295 / 4e-100 Erythronate-4-phosphate dehydrogenase family protein (.1) Lus10018819 [exp] 0 / 1 AT1G01500 303 / 3e-102 Erythronate-4-phosphate dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G115800 [exp] 262 / 7e-87 AT1G75180 310 / 2e-105 Erythronate-4-phosphate dehydrogenase family protein (.1.2.3) Potri.002G260900 [exp] 206 / 1e-64 AT1G75180 348 / 2e-120 Erythronate-4-phosphate dehydrogenase family protein (.1.2.3) Potri.014G089600 [exp] 127 / 1e-34 AT1G01500 355 / 3e-123 Erythronate-4-phosphate dehydrogenase family protein (.1) Potri.002G163300 [exp] 121 / 2e-32 AT1G01500 354 / 1e-122 Erythronate-4-phosphate dehydrogenase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026339 pacid=23156409 polypeptide=Lus10026339 locus=Lus10026339.g ID=Lus10026339.BGIv1.0 annot-version=v1.0 ATGGAGAACACTTGTGAAACATCGAATGGATACCGGCCAATGGAGAATGGCAATGCAGTATTGTCTAAGGTATCATCATCGTTAGCTTGCCTTGATTTGA AAGTGTTCTACGTTCGGGTTAGCAAGTGTGAGATTGATGATTCCATGCCAGAGTACCTCATCGTAAACCATATCCCGGTGTCTCCCAATACACTTCTCGA AGTGAATGGCATTGGAAAAAGTCGCATCGATTCTAGTGGCCAATCCACTGTGCTTCGAAGAGACCGGTTGGATAAGAAATCCGAGGAAGCTACATTTGTG AGCACAAACAGTGTAAGGACGACAGACAGTGTGAAGTTCGAGGTTTACGATGAGAAGCACATTCTCGTAGTGCATGGAGTGTTGGAACTCTGTAATGCTG TTAACGGATGTGTTGGGGAACTAAGGAGCCATTCCCAGAGATGGAGCATTAAGTGTGAGGCAGTAGATGTACGGACCAGCACTAGCTTTGTGGGTTTGGA ATCACCTGAAATCGAGGTCTATGTTGCGGGTTCATTTTCGGGGACTCCAATTATCTTAAGTACAACTCTGCATCTGAACGGCTATATGAACCGAAAGAGG AAAGGAATATTGGATTGTGTAGATGAACATGAGACAGGTAGAAGCTTTCAAGAGAAGGGCTCGTCCAGCCTTCTTTTAGAGTCGGAAGAATCGTGGGATG ATAAGGCTGAAAACGAAGACTACAAGGAGTTTTACAGAGGGATGGTTGAAATGGAAGATGAAGATGGGGAGCTGTCATGGTTCAATGCAGGTTTGAGGGT TGGGGTAGGGATAGGACTCAGAATTTGTGTTGGAATTGGAATAGGTGTAGGGTTGCTGGTTAGAGCAGGGAACCTTAGGAGGATGCTATTTTGA
AA sequence Show only first row Show all	>Lus10026339 pacid=23156409 polypeptide=Lus10026339 locus=Lus10026339.g ID=Lus10026339.BGIv1.0 annot-version=v1.0 MENTCETSNGYRPMENGNAVLSKVSSSLACLDLKVFYVRVSKCEIDDSMPEYLIVNHIPVSPNTLLEVNGIGKSRIDSSGQSTVLRRDRLDKKSEEATFV STNSVRTTDSVKFEVYDEKHILVVHGVLELCNAVNGCVGELRSHSQRWSIKCEAVDVRTSTSFVGLESPEIEVYVAGSFSGTPIILSTTLHLNGYMNRKR KGILDCVDEHETGRSFQEKGSSSLLLESEESWDDKAENEDYKEFYRGMVEMEDEDGELSWFNAGLRVGVGIGLRICVGIGIGVGLLVRAGNLRRMLF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19400			Erythronate-4-phosphate dehydr...		Lus10026339 [exp]	0	1
AT5G50410			unknown protein		Lus10017246 [exp]	5.1	0.7613
AT3G47550			RING/FYVE/PHD zinc finger supe...		Lus10021670 [exp]	6.1	0.7868
AT5G63010			Transducin/WD40 repeat-like su...		Lus10027338 [exp]	14.0	0.7094
					Lus10004560 [exp]	15.4	0.7135
AT4G00710		BSK3	BR-signaling kinase 3 (.1)		Lus10000806 [exp]	25.0	0.6829
					Lus10000811 [exp]	25.3	0.7311
AT5G06440			unknown protein		Lus10013601 [exp]	41.2	0.6769
AT2G02850		ARPN	plantacyanin (.1)		Lus10028640 [exp]	102.5	0.6740
AT3G61350		SKIP4	SKP1 interacting partner 4 (.1...		Lus10017821 [exp]	246.1	0.6556
AT2G02850		ARPN	plantacyanin (.1)		Lus10028641 [exp]	277.8	0.6447

Compare expression of checked genes

Lus10026339 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.