Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39300 100 / 6e-28 unknown protein AT2G20585 42 / 2e-05 NFD6 nuclear fusion defective 6 (.1.2.3) AT5G11630 38 / 0.0005 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039888 [exp] 44 / 7e-06 AT2G20585 77 / 2e-19 nuclear fusion defective 6 (.1.2.3) Lus10002171 [exp] 39 / 0.0003 AT2G20585 81 / 2e-21 nuclear fusion defective 6 (.1.2.3) Lus10007477 [exp] 39 / 0.0003 AT4G17310 95 / 6e-27 unknown protein Lus10032319 [exp] 39 / 0.0004 AT1G55205 75 / 5e-18 unknown protein Lus10023655 [exp] 38 / 0.0005 AT1G55205 83 / 3e-22 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G115900 [exp] 110 / 8e-32 AT4G39300 114 / 1e-34 unknown protein Potri.004G154800 [exp] 105 / 5e-30 AT4G39300 97 / 1e-27 unknown protein Potri.006G237800 [exp] 42 / 2e-05 AT5G11630 99 / 8e-29 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026340 pacid=23156453 polypeptide=Lus10026340 locus=Lus10026340.g ID=Lus10026340.BGIv1.0 annot-version=v1.0 ATGGCTTCATTTTGCAGGTCAGCTGTGATGGCGGGCTCAAGGTCTCTTGCTGGTCGGTCTAAAACTGTAACACAGAAGTCCATCTTCCCATCCTCTCCCT TCACTTCATCCTTACCAAAGCCAGCGGTTCGAAGCGCTTCAAGGGTTGTTTCAACGATAGGAAGCGTGGATTCGCTTATACCTTTTCATAGTGCCACGGC CAATGCCCGGCTTCTATCCAACATTGCTGTTGATTCCTCTTGCTGGAGCTGGCTTTCTCAAGTATGCTATGAAATGGTGTTGATCGTTTCGATCATAGTG TTTTATGTTAGTGATTCTGGTGCGTTAGGAAGTTTCATTCTGGCGATATCAAAATGCTTACCTCGATATAACATTGTTTCCGTAAGATCTTGCTTAGTTC AGAGTTCAGACATTTTTCTTGTCACTGTGATCTTCTTCTTCATCTTCTTCTTCTACTTTGATGTTATCAGTCACCTTTGTTTAGCAATCTGA
AA sequence Show only first row Show all	>Lus10026340 pacid=23156453 polypeptide=Lus10026340 locus=Lus10026340.g ID=Lus10026340.BGIv1.0 annot-version=v1.0 MASFCRSAVMAGSRSLAGRSKTVTQKSIFPSSPFTSSLPKPAVRSASRVVSTIGSVDSLIPFHSATANARLLSNIAVDSSCWSWLSQVCYEMVLIVSIIV FYVSDSGALGSFILAISKCLPRYNIVSVRSCLVQSSDIFLVTVIFFFIFFFYFDVISHLCLAI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39300			unknown protein		Lus10026340 [exp]	0	1
AT3G22660			rRNA processing protein-relate...		Lus10036936 [exp]	2.4	0.8403
AT2G29540		ATRPAC14, ATRPC...	RNApolymerase 14 kDa subunit (...		Lus10040717 [exp]	8.7	0.8232
AT5G11500			unknown protein		Lus10038625 [exp]	10.6	0.8209
AT3G14080			Small nuclear ribonucleoprotei...		Lus10008124 [exp]	14.3	0.8087
AT2G21150		XCT	XAP5 CIRCADIAN TIMEKEEPER, XAP...		Lus10007576 [exp]	15.7	0.8294
AT1G55340			Protein of unknown function (D...		Lus10013616 [exp]	16.7	0.8173
AT1G63460		ATGPX8	glutathione peroxidase 8 (.1)		Lus10008023 [exp]	17.2	0.8052
AT3G23100		XRCC4	homolog of human DNA ligase iv...		Lus10022210 [exp]	19.3	0.8086
AT4G17070			peptidyl-prolyl cis-trans isom...		Lus10036745 [exp]	24.5	0.8054
AT1G15910		FDM1	factor of DNA methylation 1, X...		Lus10040288 [exp]	25.7	0.7780

Compare expression of checked genes

Lus10026340 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.