Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39950 562 / 0 CYP79B2 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) AT2G22330 553 / 0 CYP79B3 "cytochrome P450, family 79, subfamily B, polypeptide 3", cytochrome P450, family 79, subfamily B, polypeptide 3 (.1) AT5G05260 550 / 0 CYP79A2 cytochrome p450 79a2 (.1) AT1G58260 460 / 8e-158 CYP79C3P, CYP79C2 cytochrome p450 79c2 (.1) AT5G35917 456 / 6e-157 CYP79A3P "cytochrome P450, family 79, subfamily A, polypeptide 3 pseudogene", cytochrome P450, family 79, subfamily A, polypeptide 3 pseudogene (.1) AT1G16410 431 / 2e-146 SPS1, BUS1, CYP79F1 SUPERSHOOT 1, BUSHY 1, cytochrome p450 79f1 (.1.2) AT1G79370 430 / 8e-146 CYP79C1 "cytochrome P450, family 79, subfamily C, polypeptide 1", cytochrome P450, family 79, subfamily C, polypeptide 1 (.1) AT1G16400 418 / 3e-141 CYP79F2 "cytochrome P450, family 79, subfamily F, polypeptide 2", cytochrome P450, family 79, subfamily F, polypeptide 2 (.1) AT1G01280 275 / 5e-86 CYP703A2 "cytochrome P450, family 703, subfamily A, polypeptide 2", cytochrome P450, family 703, subfamily A, polypeptide 2 (.1) AT5G07990 231 / 2e-69 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023143 [exp] 759 / 0 AT4G39950 605 / 0.0 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Lus10023144 [exp] 743 / 0 AT4G39950 604 / 0.0 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Lus10031151 [exp] 708 / 0 AT4G39950 603 / 0.0 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Lus10031726 [exp] 692 / 0 AT4G39950 573 / 0.0 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Lus10031145 [exp] 687 / 0 AT4G39950 561 / 0.0 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Lus10000239 [exp] 414 / 2e-142 AT2G22330 331 / 7e-110 "cytochrome P450, family 79, subfamily B, polypeptide 3", cytochrome P450, family 79, subfamily B, polypeptide 3 (.1) Lus10023142 [exp] 412 / 2e-142 AT4G39950 345 / 4e-116 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Lus10031727 [exp] 296 / 6e-96 AT5G35917 216 / 2e-65 "cytochrome P450, family 79, subfamily A, polypeptide 3 pseudogene", cytochrome P450, family 79, subfamily A, polypeptide 3 pseudogene (.1) Lus10012624 [exp] 263 / 2e-81 AT1G01280 769 / 0.0 "cytochrome P450, family 703, subfamily A, polypeptide 2", cytochrome P450, family 703, subfamily A, polypeptide 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G157200 [exp] 588 / 0 AT4G39950 580 / 0.0 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Potri.013G157400 [exp] 567 / 0 AT4G39950 556 / 0.0 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Potri.004G055200 [exp] 564 / 0 AT4G39950 590 / 0.0 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Potri.002G171800 [exp] 277 / 6e-87 AT1G01280 778 / 0.0 "cytochrome P450, family 703, subfamily A, polypeptide 2", cytochrome P450, family 703, subfamily A, polypeptide 2 (.1) Potri.005G045800 [exp] 249 / 9e-76 AT4G12300 577 / 0.0 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Potri.007G085000 [exp] 249 / 1e-75 AT5G07990 402 / 5e-135 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G084700 [exp] 247 / 1e-75 AT5G07990 397 / 5e-134 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G084200 [exp] 241 / 2e-73 AT3G26300 385 / 1e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.006G141400 [exp] 236 / 4e-71 AT5G07990 373 / 6e-124 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.018G051300 [exp] 230 / 5e-69 AT5G07990 379 / 9e-127 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10026341 pacid=23156446 polypeptide=Lus10026341 locus=Lus10026341.g ID=Lus10026341.BGIv1.0 annot-version=v1.0 ATGGAAACCATGATCCTCCTCGTCATTATACTCATAACCACCCTAGTTTACGCCACCTCAAAGCTTATCAAACCCGCCGTCGCCACAAAGAACCACCTCC CACTACCTCCAATCCCAAATTCGTCGTGGCCGGTCATCGGGAACATCCCTGACATCATACTCCACAAACCGGTCTTCCGGTGGGTCCACAACGTCATGAA GGAGATGAACACGGACATCTGCCTCATCCGCCTTGCCGGTACCAACATCGTACCGGTACTCGACCCGACCATCGCCAGAGAGATACTGAAGAAACAAGAC GCCATCTTCGCGGACCGCCCTATCTCTGACCTCGGGAGCCACACCATCAGCGGGGGATACTTAACCACCGCGGTCGTCCCGTGCAACAACCAGTGGCGGA AGATGCGGAAGGTGCTGACCAACGAGATATTCTCCCCCGCCAGACTCAAATGGCTGCACCAGAAGCGCGCCGATGAGGCCGACAATCTTGTTTTCTACGT CAACAACGCTCATAAGGCCGGAGAGTGCGTCAACATTCGGACTGCCACACAGCATTATTGCGGAAACATGATACGGAGGATGATGTTCGGGAAAAGGTAC TTTGGGGAGGCCACCGTGGATGGTGGACCGGGGCCTAAGGAAATTGAGCACGTGAAGGCCGCGTTCATGGTGTTGAAGTACTTGTACTCGTTTTGTTTAT CAGATTACTTGCCGTGGTTGAGAGGGATGAATGTTGATGGACAGGAGAGGATCGTTAAGGAGTCGAATAAGGCGTTGCGAATTTACCAAGACCCTATTAT CGACGAGAGGATTCGAGTTTGGGAGAGCGGGGAGAGGAAGGAGATGGATGACTTGACAGATGTTTTCATTAATCTCAAGGATGCTCATGGCGAGTCCTTG CTCACTCCTGACGAAATCAAGCACCAAGTTGCGGAAATCATGATAGCTGCTCTAGACAATCCATCCAACGCAGTGGAATGGACAATGGCAGAGTTGATTA ACCAACCGGATCTCCTTGCAAGAGCAACCGACGAAATCGACCGGGTCGTCGGAAAAAACCGGCTGGTCCAAGAATCCGACATCGGGAGCTTGAATTACGT GAAGGCATGTGCTAGGGAGACGTTCCGGCTGCACCCGATGTTACCATTCAACGCCCCGCACGTCGCCACTCAAGACACCATCGTCGCCGGCTACTTCATC CCCAAAGGTAGCTACACGCTCCTCAGTCGCTACGGCCTGGGTCGCAACCCGAAAGCCTGGGCCGACCCCTTAAAATTCGACCCGAACCGGCACATCAATG GTGACGACGTTGTCCAGTTTGGTGAGCCCGATCTGAGGTTCATATCGTTTAGCACGGGACGCCGAGCATGTGCGGCGCCGCTGCTGGGAACGTGCATGAC CGTAATGTTGCTGGCAAGGCTGCTACATTGCTTCACTTGGACCCTACCGGAGAAGGGCCACACCGTTGATCTCGCGGAGGCTGAGGATGAGCTTGTACTT GCCACGCCGCTCACCGCGTTTCCTGCCCCACGTTTGGCTCCTCATTTATACCCTACACTCTCTTGA
AA sequence Show only first row Show all	>Lus10026341 pacid=23156446 polypeptide=Lus10026341 locus=Lus10026341.g ID=Lus10026341.BGIv1.0 annot-version=v1.0 METMILLVIILITTLVYATSKLIKPAVATKNHLPLPPIPNSSWPVIGNIPDIILHKPVFRWVHNVMKEMNTDICLIRLAGTNIVPVLDPTIAREILKKQD AIFADRPISDLGSHTISGGYLTTAVVPCNNQWRKMRKVLTNEIFSPARLKWLHQKRADEADNLVFYVNNAHKAGECVNIRTATQHYCGNMIRRMMFGKRY FGEATVDGGPGPKEIEHVKAAFMVLKYLYSFCLSDYLPWLRGMNVDGQERIVKESNKALRIYQDPIIDERIRVWESGERKEMDDLTDVFINLKDAHGESL LTPDEIKHQVAEIMIAALDNPSNAVEWTMAELINQPDLLARATDEIDRVVGKNRLVQESDIGSLNYVKACARETFRLHPMLPFNAPHVATQDTIVAGYFI PKGSYTLLSRYGLGRNPKAWADPLKFDPNRHINGDDVVQFGEPDLRFISFSTGRRACAAPLLGTCMTVMLLARLLHCFTWTLPEKGHTVDLAEAEDELVL ATPLTAFPAPRLAPHLYPTLS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39950		CYP79B2	"cytochrome P450, family 79, s...		Lus10026341 [exp]	0	1
AT5G66850		MAPKKK5	mitogen-activated protein kina...		Lus10009339 [exp]	3.7	0.8312
AT5G66040		STR16	sulfurtransferase protein 16 (...		Lus10012566 [exp]	16.2	0.8326
AT1G47670			Transmembrane amino acid trans...		Lus10012281 [exp]	19.5	0.7397
AT5G08560			transducin family protein / WD...		Lus10001412 [exp]	23.1	0.7911
AT5G46060			Protein of unknown function, D...		Lus10005267 [exp]	24.0	0.7877
AT2G17070			Arabidopsis protein of unknown...		Lus10020490 [exp]	30.5	0.8163
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Lus10034617 [exp]	48.0	0.7823
AT5G19410		ABCG23	ATP-binding cassette G23, ABC-...		Lus10017683 [exp]	55.6	0.7840
AT5G12230		MED19A	unknown protein		Lus10008738 [exp]	58.2	0.7852
AT4G23700		ATCHX17	cation/H+ exchanger 17, cation...		Lus10028747 [exp]	69.6	0.7800

Compare expression of checked genes

Lus10026341 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.