Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21710 199 / 7e-57 EMB2219 embryo defective 2219, Mitochondrial transcription termination factor family protein (.1) AT1G78930 56 / 6e-08 Mitochondrial transcription termination factor family protein (.1) AT4G02990 55 / 9e-08 RUG2, BSM RUGOSA 2, BELAYA SMERT, Mitochondrial transcription termination factor family protein (.1) AT4G38160 50 / 2e-06 PDE191 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3) AT2G44020 50 / 2e-06 Mitochondrial transcription termination factor family protein (.1) AT2G03050 49 / 4e-06 SOLDAT10, EMB93 SINGLET OXYGEN-LINKED DEATH ACTIVATOR 10, EMBRYO DEFECTIVE 93, Mitochondrial transcription termination factor family protein (.1) AT2G34620 44 / 0.0001 Mitochondrial transcription termination factor family protein (.1) AT4G09620 41 / 0.0006 Mitochondrial transcription termination factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042322 [exp] 449 / 1e-152 AT2G21710 720 / 0.0 embryo defective 2219, Mitochondrial transcription termination factor family protein (.1) Lus10004534 [exp] 62 / 3e-10 AT2G44020 477 / 7e-168 Mitochondrial transcription termination factor family protein (.1) Lus10022321 [exp] 62 / 5e-10 AT4G02990 540 / 0.0 RUGOSA 2, BELAYA SMERT, Mitochondrial transcription termination factor family protein (.1) Lus10004614 [exp] 59 / 5e-09 AT2G44020 707 / 0.0 Mitochondrial transcription termination factor family protein (.1) Lus10032061 [exp] 58 / 9e-09 AT4G14605 521 / 0.0 Mitochondrial transcription termination factor family protein (.1) Lus10035227 [exp] 58 / 1e-08 AT4G14605 518 / 0.0 Mitochondrial transcription termination factor family protein (.1) Lus10014877 [exp] 49 / 9e-06 AT4G02990 665 / 0.0 RUGOSA 2, BELAYA SMERT, Mitochondrial transcription termination factor family protein (.1) Lus10013854 [exp] 48 / 1e-05 AT4G38160 446 / 2e-158 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3) Lus10035714 [exp] 46 / 5e-05 AT1G78930 582 / 0.0 Mitochondrial transcription termination factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G116200 [exp] 258 / 1e-78 AT2G21710 748 / 0.0 embryo defective 2219, Mitochondrial transcription termination factor family protein (.1) Potri.017G067600 [exp] 67 / 1e-11 AT4G14605 571 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.013G116700 [exp] 63 / 2e-10 AT2G44020 764 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.007G001800 [exp] 56 / 3e-08 AT1G78930 633 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.014G137400 [exp] 56 / 5e-08 AT4G02990 669 / 0.0 RUGOSA 2, BELAYA SMERT, Mitochondrial transcription termination factor family protein (.1) Potri.004G209400 [exp] 46 / 3e-05 AT4G38160 481 / 3e-172 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3) Potri.009G170300 [exp] 45 / 0.0001 AT4G38160 479 / 8e-170 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02536 [flax] [poplar] mTERF mTERF
Representative CDS sequence Show only first row Show all	>Lus10026342 pacid=23156610 polypeptide=Lus10026342 locus=Lus10026342.g ID=Lus10026342.BGIv1.0 annot-version=v1.0 ATGCCAAAACCGCTTCCCTCCTCACCCGCCACCTGCATCGCCAATCCCCTGTTCCTCAACCCTGGGAGGAATTTCAGCTACATGAGGATGCTATCCCTTC TCGAGGAGCAAGTTAAGCGTCAGGAGCTATCCCTTGTCGCCACCAGGCGAGCTCCCAGGTTCCCTGGTTCCATCTCCTCTTACCGCTCTGACGCCTCTAC TTCTCCTTTGCAAACACTCATCCCCTCTTACGACGATGAAGAAGACGGGGAAATTATAATCAAGGCAGTTGAGATCCGCAGGAAAGTTACCGCTGAGATT TTCTTGCAGGCTATGAAAAAGGGCAAATTCGGATTGACCTATTCCACCAATTTGGCCTCTAAATTGGGGGATTTCCTTGATTTCGTTATGATCCAAGCTG CCGAGATGTGGTTGAAGCACAATGAGTTGTCGTATCCCAAGATTGTGAAGCTCTTGAACATGGCAAGAGGTGAACTTGAATTCGTTAGGCGACTTGCTGA ATGGTTAAAGACGATTCATTTGAAAGGGGAATTTATCGGGCCAGTGCTCACCAAAGCAGGCGACAACATCTTGAAGCGAAGCAACGAGGAGCTGGATGAA ATTGTGAGTATTTGTATGGACGAAGTGAGAACACGAGTAAAGTTCTTCACGGATATGGACATGAAAAAGAAGGATTTCTGTACGATGGTGTTTCAATATC CTAGAGTCCTTGGATATTTCAGTCTTGAGGAGATGAACCAAAAGGTCCGGTTTTTTCAAGACATCGGCATTGAGGATGCTGCCATTGGGAATATGCTTGC TAAGTACCCTCCATTACTCACCTACAGCCTGCAGAAGAAAATTCGGGCAGTGGTTGTATTTTTTACGACGAGAGCTGGGGTTAGTCAAACGGACATTGCG ACGGTTATAGCTTCAGGGCCTGAGCTGTTGGGGTGTAGCATAGTGCATAAACTAGACATCAATGTTAAAGTACTTTCTGTCCCTTGGCATACGACCTCGA GTACTGGGGGAGATGATTGCAGACTTCCCCATGTTACTCCGGTACAACATAGAAGTCCTCCGTCCAAAGTATCGATACTTGAGACGAACGATGGTTGGGA GCTTACAAGATGTCATCGAGTACCCAAGGTTGGTGTTTTGTACAGGTTCTTCAGTTATTCACCTGAGGAGCGAATAATTCCTCGGTACAAAGTTATGGTG GAGAACCAGATGAATATGAAACTGAGGTACATGCTAGCATGCAGCGATGAAGAGTTCGAGAAGAAGGTAGAGTCAACTCTGGAAAAGCGGCGAAGTTTTG AAGCTGGCTCACTAGAATTGGCAACAACTGGAAGTGACAACGATGAGTTGGAACTCTGTACTTCTTGTACCGAAGGTTGCTGTTTGTTTATCTTGCTTAG GGAATTCAAGCCTAGACAACGTCGTAGAACTGGAGACCCCACTGTATGTATAGCCGTCGTAAGAGCGAACTAG
AA sequence Show only first row Show all	>Lus10026342 pacid=23156610 polypeptide=Lus10026342 locus=Lus10026342.g ID=Lus10026342.BGIv1.0 annot-version=v1.0 MPKPLPSSPATCIANPLFLNPGRNFSYMRMLSLLEEQVKRQELSLVATRRAPRFPGSISSYRSDASTSPLQTLIPSYDDEEDGEIIIKAVEIRRKVTAEI FLQAMKKGKFGLTYSTNLASKLGDFLDFVMIQAAEMWLKHNELSYPKIVKLLNMARGELEFVRRLAEWLKTIHLKGEFIGPVLTKAGDNILKRSNEELDE IVSICMDEVRTRVKFFTDMDMKKKDFCTMVFQYPRVLGYFSLEEMNQKVRFFQDIGIEDAAIGNMLAKYPPLLTYSLQKKIRAVVVFFTTRAGVSQTDIA TVIASGPELLGCSIVHKLDINVKVLSVPWHTTSSTGGDDCRLPHVTPVQHRSPPSKVSILETNDGWELTRCHRVPKVGVLYRFFSYSPEERIIPRYKVMV ENQMNMKLRYMLACSDEEFEKKVESTLEKRRSFEAGSLELATTGSDNDELELCTSCTEGCCLFILLREFKPRQRRRTGDPTVCIAVVRAN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21710		EMB2219	embryo defective 2219, Mitocho...		Lus10026342 [exp]	0	1
AT5G17440			LUC7 related protein (.1)		Lus10026846 [exp]	4.0	0.8057
AT3G50670		U1SNRNP, U1-70K	U1 small nuclear ribonucleopro...		Lus10026026 [exp]	10.7	0.7913
AT3G49000			RNA polymerase III subunit RPC...		Lus10012787 [exp]	15.2	0.7382
AT2G26200			S-adenosyl-L-methionine-depend...		Lus10024993 [exp]	25.4	0.7721
AT4G23050			PAS domain-containing protein ...		Lus10024502 [exp]	34.4	0.7570
AT2G36070		ATTIM44-2	translocase inner membrane sub...		Lus10024888 [exp]	34.9	0.7435
AT3G62000			S-adenosyl-L-methionine-depend...		Lus10010276 [exp]	36.9	0.7190
AT5G48970			Mitochondrial substrate carrie...		Lus10037508 [exp]	42.3	0.7347
					Lus10026307 [exp]	43.2	0.6820
AT5G17930			MIF4G domain-containing protei...		Lus10014048 [exp]	49.6	0.7359

Compare expression of checked genes

Lus10026342 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.