Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19440 890 / 0 KCS4 3-ketoacyl-CoA synthase 4 (.1) AT2G16280 855 / 0 KCS9 3-ketoacyl-CoA synthase 9 (.1) AT4G34510 744 / 0 KCS17, KCS2 3-ketoacyl-CoA synthase 17 (.1) AT2G26640 712 / 0 KCS11 3-ketoacyl-CoA synthase 11 (.1) AT1G68530 680 / 0 KCS6, CER6, POP1, G2, CUT1 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2) AT1G25450 664 / 0 KCS5, CER60 ECERIFERUM 60, 3-ketoacyl-CoA synthase 5 (.1) AT1G04220 657 / 0 KCS2 3-ketoacyl-CoA synthase 2 (.1) AT4G34520 650 / 0 KCS18, FAE1 FATTY ACID ELONGATION1, 3-ketoacyl-CoA synthase 18 (.1) AT1G01120 635 / 0 KCS1 3-ketoacyl-CoA synthase 1 (.1) AT5G43760 634 / 0 KCS20 3-ketoacyl-CoA synthase 20 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042318 [exp] 1064 / 0 AT1G19440 890 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10002533 [exp] 882 / 0 AT1G19440 890 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10001657 [exp] 880 / 0 AT1G19440 892 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10019446 [exp] 690 / 0 AT2G26640 897 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Lus10043300 [exp] 690 / 0 AT2G26640 897 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Lus10034319 [exp] 676 / 0 AT1G68530 895 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2) Lus10041452 [exp] 672 / 0 AT1G25450 890 / 0.0 ECERIFERUM 60, 3-ketoacyl-CoA synthase 5 (.1) Lus10006637 [exp] 653 / 0 AT1G04220 819 / 0.0 3-ketoacyl-CoA synthase 2 (.1) Lus10002691 [exp] 649 / 0 AT1G01120 845 / 0.0 3-ketoacyl-CoA synthase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G155600 [exp] 911 / 0 AT1G19440 899 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Potri.009G116700 [exp] 909 / 0 AT1G19440 899 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Potri.014G196200 [exp] 873 / 0 AT1G19440 854 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Potri.018G032200 [exp] 728 / 0 AT2G26640 867 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.006G249200 [exp] 719 / 0 AT2G26640 886 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G125300 [exp] 696 / 0 AT1G68530 915 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2) Potri.008G160000 [exp] 689 / 0 AT2G26640 821 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.008G120300 [exp] 688 / 0 AT1G68530 895 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2) Potri.010G079500 [exp] 671 / 0 AT2G26640 758 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G080200 [exp] 671 / 0 AT2G26640 759 / 0.0 3-ketoacyl-CoA synthase 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [flax] [poplar] Thiolase PF08392 [flax] [poplar] FAE1_CUT1_RppA FAE1/Type III polyketide synthase-like protein CL0046 [flax] [poplar] Thiolase PF08541 [flax] [poplar] ACP_syn_III_C 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Representative CDS sequence Show only first row Show all	>Lus10026345 pacid=23156442 polypeptide=Lus10026345 locus=Lus10026345.g ID=Lus10026345.BGIv1.0 annot-version=v1.0 ATGAGTAGTGGTGATGGAGGATGCGAAGTTCAGATCCAGCACCAACCAAGAAGATTGCCAGATTTCCTACAGAGCGTCAATCTGAAACACGTGAAGCTCG GTTACCATTACCTGGTGAGCAATCTATTGACCTTATGTCTCATCCCGCTAATGGCGGTCATTGTGATCCAGCTCTCCCAATTGGATCCGGAAGCCCTCCG CCAGCTCTGGCTCCATCTCAAATACAATCTCGTCGCAGTAATCATTTGTTCCACTTTCCTCGTCTCCGGAATCACCGTCTACGTCATGACCCGGCCCAAC CCGGTCTACCTCGTCGACTACGCCTGCTATAAGCCACCGGAGGAGCTCAAAGTAAAGTACAAGAAATTCATGGATCATTCCAGGCTCACCGGAGATTTCG ACGAGTCGTCGTTGGAATTCCAGCGCAAGATCCTCGAGAGATCCGGTCTCGGAGAGGAAACCTACGTCCCCGAGGCGATGCTCTTCATCCCTCCCCGGCC GTCGATGCAGGCCGCCAGGGAAGAAGCTGAACAGGTGATGTTTGGCTCGCTCGATACTCTATTCGCCAACACCAAAATCAAACCTAAAGATGTAGGGATT CTTGTTGTCAACTGTAGCTTGTTTAACCCGACTCCTTCGCTTTCCGCCATGATTGTGAACAAATACAAACTGAGAGGCAACATCAGGAGCTACAATCTCG GTGGAATGGGATGTAGCGCTGGAGTTATATCGATCAATTTGGCTAAGGATTTGTTGCAAGTTCATAGGAATACTTACGCTGTTGTTGTAAGCACCGAGAA CATTACTCAGAATTGGTATTTCGGGAACAAGAAGGCCATGCTTATACCTAATTGCTTGTTTAGAGTTGGTGGCTCTGCAGTTCTCTTATCCAACAAATCT AAAGATCGGAGACGGTCGAAATACAGGCTTGTTCATGTCGTCAGGACTCATAAGGGAGCCGACGACAAGGCTTTTAAATGTGTGTATCAAGAGCAGGATG ATGCTGGAAAGACTGGAGTTTCTTTATCGAAAGATCTCATGGCGATTGCAGGTGGTGCATTGAAGACTAACATCACAACATTGGGTCCACTTGTGCTTCC GATTAGTGAGCAGCTTCTCTTCTTCATGACACTGATTGCTAAGAAGCTGTTCAATGCTAAGGTGAAGCCTTACATACCGGATTTCAAGCTCGCTTTCGAG CATTTCTGCATCCATGCCGGAGGGAGAGCTGTGATTGACGAGCTGGAGAAGAATCTGCAGCTTCTTCCCCAGCATGTGGAAGCGTCGAGGATGACACTGC ATCGATTCGGGAACACATCCTCGAGCTCGATTTGGTACGAGCTGGCTTACACGGAGGCTAAGGGGAGGATGAGGAGAGGGAACAGGGTGTGGCAGATTGC GTTTGGGAGCGGGTTTAAGTGTAACAGCGCGGTGTGGGAAGCGCTGAAGAATGTGAAGCCTTCGGTTGATAATCCGTGGGAGGATTGCGTGGATAGGTAT CCTGTTGAGTCGGTGTTTGAACTTTCTGAAGCAGCAGCTAAAGGGTCTTGA
AA sequence Show only first row Show all	>Lus10026345 pacid=23156442 polypeptide=Lus10026345 locus=Lus10026345.g ID=Lus10026345.BGIv1.0 annot-version=v1.0 MSSGDGGCEVQIQHQPRRLPDFLQSVNLKHVKLGYHYLVSNLLTLCLIPLMAVIVIQLSQLDPEALRQLWLHLKYNLVAVIICSTFLVSGITVYVMTRPN PVYLVDYACYKPPEELKVKYKKFMDHSRLTGDFDESSLEFQRKILERSGLGEETYVPEAMLFIPPRPSMQAAREEAEQVMFGSLDTLFANTKIKPKDVGI LVVNCSLFNPTPSLSAMIVNKYKLRGNIRSYNLGGMGCSAGVISINLAKDLLQVHRNTYAVVVSTENITQNWYFGNKKAMLIPNCLFRVGGSAVLLSNKS KDRRRSKYRLVHVVRTHKGADDKAFKCVYQEQDDAGKTGVSLSKDLMAIAGGALKTNITTLGPLVLPISEQLLFFMTLIAKKLFNAKVKPYIPDFKLAFE HFCIHAGGRAVIDELEKNLQLLPQHVEASRMTLHRFGNTSSSSIWYELAYTEAKGRMRRGNRVWQIAFGSGFKCNSAVWEALKNVKPSVDNPWEDCVDRY PVESVFELSEAAAKGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19440		KCS4	3-ketoacyl-CoA synthase 4 (.1)		Lus10026345 [exp]	0	1
AT1G21000			PLATZ transcription factor fam...		Lus10027735 [exp]	1.7	0.9137
AT1G76880	Trihelix		Duplicated homeodomain-like su...		Lus10018887 [exp]	5.3	0.8879
AT4G36750			Quinone reductase family prote...		Lus10040486 [exp]	5.9	0.8949
AT2G44740		CYCP4;1	cyclin p4;1 (.1)		Lus10032505 [exp]	7.3	0.9070
AT3G63470		SCPL40	serine carboxypeptidase-like 4...		Lus10005327 [exp]	7.3	0.9089
AT3G17120			unknown protein		Lus10017073 [exp]	7.4	0.8788
AT2G29390		ATSMO2-2, SMO2-...	Arabidopsis thaliana sterol 4-...		Lus10040739 [exp]	11.2	0.8754
AT2G45790		ATPMM	phosphomannomutase (.1)		Lus10040934 [exp]	13.4	0.8178
AT2G44740		CYCP4;1	cyclin p4;1 (.1)		Lus10043003 [exp]	13.4	0.9062
AT1G47740			PPPDE putative thiol peptidase...		Lus10040485 [exp]	14.9	0.8765

Compare expression of checked genes

Lus10026345 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.