Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21620 235 / 7e-77 RD2 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) AT3G53990 60 / 1e-10 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) AT3G62550 55 / 5e-09 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) AT3G58450 54 / 2e-08 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) AT5G14680 53 / 3e-08 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) AT3G11930 52 / 8e-08 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3.4) AT1G68300 46 / 6e-06 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) AT3G03270 45 / 2e-05 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) AT2G47710 42 / 0.0002 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) AT1G09740 40 / 0.001 Adenine nucleotide alpha hydrolases-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042317 [exp] 352 / 4e-122 AT2G21620 177 / 2e-56 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Lus10042316 [exp] 278 / 9e-94 AT2G21620 284 / 3e-99 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Lus10022602 [exp] 57 / 2e-09 AT3G53990 225 / 2e-76 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Lus10021104 [exp] 54 / 1e-08 AT3G53990 215 / 2e-72 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Lus10017207 [exp] 54 / 2e-08 AT3G53990 217 / 2e-73 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Lus10014545 [exp] 54 / 3e-08 AT5G14680 295 / 6e-104 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Lus10032142 [exp] 53 / 5e-08 AT5G14680 296 / 3e-104 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Lus10021501 [exp] 51 / 7e-08 AT3G53990 144 / 3e-45 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Lus10006701 [exp] 50 / 4e-07 AT2G47710 218 / 1e-73 Adenine nucleotide alpha hydrolases-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G156200 [exp] 242 / 1e-79 AT2G21620 256 / 3e-88 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Potri.009G117500 [exp] 225 / 6e-73 AT2G21620 258 / 5e-89 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Potri.004G156100 [exp] 214 / 2e-68 AT2G21620 241 / 6e-82 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Potri.006G092700 [exp] 64 / 5e-12 AT3G53990 207 / 1e-69 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Potri.014G122000 [exp] 60 / 1e-10 AT3G62550 195 / 1e-64 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Potri.002G196700 [exp] 60 / 2e-10 AT3G62550 196 / 6e-65 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Potri.016G104600 [exp] 59 / 2e-10 AT3G53990 229 / 6e-78 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Potri.006G198200 [exp] 57 / 2e-09 AT3G11930 209 / 9e-69 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3.4) Potri.005G015200 [exp] 57 / 2e-09 AT3G62550 156 / 4e-49 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Potri.016G064000 [exp] 56 / 4e-09 AT3G11930 214 / 4e-71 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF00582 [flax] [poplar] Usp Universal stress protein family
Representative CDS sequence Show only first row Show all	>Lus10026346 pacid=23156459 polypeptide=Lus10026346 locus=Lus10026346.g ID=Lus10026346.BGIv1.0 annot-version=v1.0 ATGGAAGTGGTGCAGGAAGAAGAAGAGTACAACTGGAAGGAAGTAAAGTTGCCATCTTTGATCCCTAAAGTTCCAGAACCAGAGTTGGAGAGAGAGAAAG GGGAAAGGAGGAGAGGCAGAGATATTATCATAGCGATTGATCATGGACCCAACAGCAAGCATGCCTTTGATTGGGCTCTCATCCATTTCTCCAGGCTTGC CGATACCCTCCATCTTGTTCATGCCGTCTCAAGTGTGAAGAATGATATTGTGGATGAGATGACGCAAGCCCTTATGGAGAAGCTCGCTGTTGAGGCTTTT CAGGTTTCTATGGTGAAAAGTGTGGCTAGGATAGTGCAAGGAGATGCAGGCAAAGTAATTTGCAAGGAAGCTGAAAGGATTAAGCCTGCAGCTGTTGTGA TGGGCACTAGAGGCAGAAGCTTAGTTCAGAGTGTGCTGCAAGGAAGTGTGAGTGAGTACTGTTTTCACCACTGCAAAGCTGCACCTGTCATCATTGTTCC AGGGACAGGCGCACAAAGACAGAGAGGGATGGAGGATCCAAACTGCAAGAAAAGAGAGAAGCAAACAGCGAAAACACTGGAAACAGTGGAGGAAGATGAG GTGTATGATCATGGTTGGAATGATGAAGCAGAAGAAGAACAAAGGAAGAGAATATCAGAGCTGGACATGGAAACAGCAGAAGGAAGAAGGAGAAGAAGAA TAGAAAATGGTGGAGAAGGAGGAAGACACATAATTGTAGGGATCGATCATGGACCAAACAGCAAGCATGCCTTCAACTGGGCTCTGCTTCACCTCTGCCG ACAGGCTGACACCCTTCACCTTGTTCATGCCCTTTCTGATGCAAAGAACAAGTTGCTTTCTGACATGGCTGAAGGGTTGGTGGAGAAGTTTACACTTGAG GCTTTGAGGATGGCTAAAGTGAAGGTGGTGGGGAGAATAGTGGAAGGAGAGGCAAGTAAGGTTATTTGCAAGGAAGCAGAGAGGCTAAAACCTGTGGCAG TTGTACTAGGAACCAGAGGCAGATCTCTTTTTCAAAGTGTGGTGCAAGGAAGTGTTGGGGAGTATTGTTTCCACCACATGAAAGTTCCAGTCATAATTGT TCCTCTGCAATGTCAGTGTCTACCTACTGTCTTCTTCTAA
AA sequence Show only first row Show all	>Lus10026346 pacid=23156459 polypeptide=Lus10026346 locus=Lus10026346.g ID=Lus10026346.BGIv1.0 annot-version=v1.0 MEVVQEEEEYNWKEVKLPSLIPKVPEPELEREKGERRRGRDIIIAIDHGPNSKHAFDWALIHFSRLADTLHLVHAVSSVKNDIVDEMTQALMEKLAVEAF QVSMVKSVARIVQGDAGKVICKEAERIKPAAVVMGTRGRSLVQSVLQGSVSEYCFHHCKAAPVIIVPGTGAQRQRGMEDPNCKKREKQTAKTLETVEEDE VYDHGWNDEAEEEQRKRISELDMETAEGRRRRRIENGGEGGRHIIVGIDHGPNSKHAFNWALLHLCRQADTLHLVHALSDAKNKLLSDMAEGLVEKFTLE ALRMAKVKVVGRIVEGEASKVICKEAERLKPVAVVLGTRGRSLFQSVVQGSVGEYCFHHMKVPVIIVPLQCQCLPTVFF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21620		RD2	Adenine nucleotide alpha hydro...		Lus10026346 [exp]	0	1
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10014925 [exp]	3.7	0.8763
AT3G52105			unknown protein		Lus10019704 [exp]	3.9	0.8627
AT5G04260		WCRKC2	WCRKC thioredoxin 2 (.1)		Lus10038703 [exp]	4.2	0.8729
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10038815 [exp]	7.5	0.8494
AT2G21620		RD2	Adenine nucleotide alpha hydro...		Lus10042316 [exp]	10.6	0.8894
AT3G11820		PEN1, AT-SYR1, ...	PENETRATION1, SYNTAXIN RELATED...		Lus10016173 [exp]	12.4	0.8382
AT3G57870		SCE1A, SCE1, AH...	SUMO CONJUGATING ENZYME 1A, EM...		Lus10009377 [exp]	15.5	0.8377
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Lus10037992 [exp]	16.6	0.8590
AT1G08315			ARM repeat superfamily protein...		Lus10026170 [exp]	19.9	0.8161
AT5G15730		CRLK2, AtCRLK2	calcium/calmodulin-regulated r...		Lus10008540 [exp]	22.0	0.8627

Compare expression of checked genes

Lus10026346 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.