Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21610 399 / 2e-139 PE11, ATPE11 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) AT5G19730 277 / 5e-91 Pectin lyase-like superfamily protein (.1) AT5G55590 255 / 1e-82 QRT1 QUARTET 1, Pectin lyase-like superfamily protein (.1) AT5G47500 243 / 6e-78 PME5 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1) AT2G36710 241 / 1e-76 Pectin lyase-like superfamily protein (.1) AT5G07430 240 / 1e-76 Pectin lyase-like superfamily protein (.1) AT3G29090 236 / 5e-76 PME31, ATPME31 A. THALIANA PECTIN METHYLESTERASE 31, pectin methylesterase 31 (.1) AT3G17060 233 / 2e-74 Pectin lyase-like superfamily protein (.1) AT5G07420 229 / 1e-72 Pectin lyase-like superfamily protein (.1) AT1G05310 226 / 8e-71 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042315 [exp] 563 / 0 AT2G21610 383 / 5e-133 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) Lus10023560 [exp] 469 / 8e-167 AT2G21610 368 / 4e-127 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) Lus10012942 [exp] 279 / 2e-91 AT5G19730 594 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10043035 [exp] 273 / 6e-90 AT5G19730 555 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10000045 [exp] 268 / 2e-89 AT2G21610 214 / 8e-69 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) Lus10011132 [exp] 270 / 4e-88 AT5G19730 575 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10040446 [exp] 260 / 2e-85 AT2G21610 181 / 9e-55 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) Lus10028364 [exp] 256 / 1e-83 AT5G19730 437 / 4e-154 Pectin lyase-like superfamily protein (.1) Lus10004720 [exp] 254 / 7e-82 AT5G47500 519 / 0.0 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G156300 [exp] 458 / 9e-163 AT2G21610 457 / 3e-162 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) Potri.018G068400 [exp] 277 / 5e-91 AT5G19730 603 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.007G015700 [exp] 259 / 5e-84 AT5G19730 472 / 2e-167 Pectin lyase-like superfamily protein (.1) Potri.008G104800 [exp] 248 / 3e-80 AT3G17060 477 / 5e-170 Pectin lyase-like superfamily protein (.1) Potri.003G076900 [exp] 244 / 2e-78 AT5G47500 554 / 0.0 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1) Potri.014G117100 [exp] 244 / 6e-78 AT5G19730 320 / 3e-107 Pectin lyase-like superfamily protein (.1) Potri.001G365700 [exp] 245 / 8e-78 AT5G55590 429 / 1e-149 QUARTET 1, Pectin lyase-like superfamily protein (.1) Potri.004G128820 [exp] 236 / 6e-76 AT3G29090 562 / 0.0 A. THALIANA PECTIN METHYLESTERASE 31, pectin methylesterase 31 (.1) Potri.006G120100 [exp] 237 / 8e-75 AT2G36710 449 / 3e-157 Pectin lyase-like superfamily protein (.1) Potri.006G137100 [exp] 232 / 2e-73 AT1G69940 355 / 1e-121 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase
Representative CDS sequence Show only first row Show all	>Lus10026347 pacid=23156407 polypeptide=Lus10026347 locus=Lus10026347.g ID=Lus10026347.BGIv1.0 annot-version=v1.0 ATGAAGTCTTACATCGATCAACTCGTTGCTCCAGTACTTACCATACTAATCATGATAGCCTCCGTCGCCGGTACTGCTTCTCCGACCAGTACCAAATTGT CGGTTGCGAATTTGATAAGGGTGGACCAGTCCGGAAAGGGTGATTTCACGACGATTCAGGAGGCAATCGACTCGGTTCCATCCGAAAATTCGGAATTGGT TTTCATATGGGTTAAACCGGGCGTCTACGTCGAAAAAGTCACGGTCCCTGCAGACAAGCCGTTCATTACTCTTAGCGGAACATCTCTCTATCATGCAAAC ACGACCGTCATATCATGGTGCCAGTCTGCCGAAAATATTTTCGAATCCGCCACTCTTTCGGTCCTCGCACCTTTCTTCGTTGCTCGATTTCTCACCGTGG ACAACACATACGGGAGCGGAGGCAAAGCTGTGGCTCTAAGGGTTTCCGGTGACAGGGCTGCGTTTTACGGGTGCAGGATCCTGTCCTACCAGGACACTCT CTTGGACGATACCGGAAGCCATTATTATTCTAATTGCTATATCCAAGGAGCCACTGATTTCATCTGCGGCCATGCTGCCTCCCTCTTTGAGAAATGTCAT ATCCATTCAGTATCAGAGAGCAATAATGGGTTCATCACAGCACAACACAGGGATGTAGAGAGCGATGAAAGTGGGTACACTTTCTTGGGGTGCAAGATAA CTGCAACTGGCCCGACATTTCTAGGAAGGCCATGGGGGGCTTATTCAAGGGTCGTTTTTGCATATTCATACATGGCTTCTGATGTCCTTCCCGCTGGATG GAGTGACTGGGGAGACAGTTCCAAGCAAAGTACTGCATTTTACGCGGAATACAAGAATTACGGACCTGGGGCTGATAAATCGAAGAGGGTAGCTTGGTCG AAGAAATTATCAACGATGGAGGCTTCGCCGTTTTTGAGCAAGAAAATGATCGGCGGGAGGAATTGGATTAGGGCTGCTCCTAAACTCTTTAGACTCGGGG CTAAAATCGTCAAGGCTGGCTCAGCTGGCACTCCTTCTCAATCTTGA
AA sequence Show only first row Show all	>Lus10026347 pacid=23156407 polypeptide=Lus10026347 locus=Lus10026347.g ID=Lus10026347.BGIv1.0 annot-version=v1.0 MKSYIDQLVAPVLTILIMIASVAGTASPTSTKLSVANLIRVDQSGKGDFTTIQEAIDSVPSENSELVFIWVKPGVYVEKVTVPADKPFITLSGTSLYHAN TTVISWCQSAENIFESATLSVLAPFFVARFLTVDNTYGSGGKAVALRVSGDRAAFYGCRILSYQDTLLDDTGSHYYSNCYIQGATDFICGHAASLFEKCH IHSVSESNNGFITAQHRDVESDESGYTFLGCKITATGPTFLGRPWGAYSRVVFAYSYMASDVLPAGWSDWGDSSKQSTAFYAEYKNYGPGADKSKRVAWS KKLSTMEASPFLSKKMIGGRNWIRAAPKLFRLGAKIVKAGSAGTPSQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21610		PE11, ATPE11	A. THALIANA PECTINESTERASE 11,...		Lus10026347 [exp]	0	1
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10001009 [exp]	2.6	0.8279
AT5G39130			RmlC-like cupins superfamily p...		Lus10015129 [exp]	11.5	0.7094
AT4G20860			FAD-binding Berberine family p...		Lus10038446 [exp]	12.0	0.7501
AT1G01280		CYP703A2	"cytochrome P450, family 703, ...		Lus10010119 [exp]	12.8	0.7094
AT3G46560		TIM9, EMB2474	embryo defective 2474, Tim10/D...		Lus10028819 [exp]	13.6	0.6179
AT4G04960			Concanavalin A-like lectin pro...		Lus10039837 [exp]	14.1	0.7094
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10013067 [exp]	14.8	0.7152
AT5G01180		ATPTR5	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10017177 [exp]	15.2	0.7094
					Lus10017294 [exp]	16.2	0.7094
AT2G28085			SAUR-like auxin-responsive pro...		Lus10041336 [exp]	17.0	0.6660

Compare expression of checked genes

Lus10026347 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.