Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39230 442 / 2e-157 NmrA-like negative transcriptional regulator family protein (.1) AT1G75280 428 / 5e-152 NmrA-like negative transcriptional regulator family protein (.1) AT1G75290 410 / 4e-145 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G75300 395 / 5e-139 NmrA-like negative transcriptional regulator family protein (.1) AT1G19540 358 / 2e-124 NmrA-like negative transcriptional regulator family protein (.1) AT4G34540 279 / 1e-93 NmrA-like negative transcriptional regulator family protein (.1) AT1G32100 253 / 4e-83 ATPRR1 pinoresinol reductase 1 (.1) AT4G13660 245 / 4e-80 ATPRR2 pinoresinol reductase 2 (.1) AT4G33360 40 / 0.001 FLDH farnesol dehydrogenase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042313 [exp] 498 / 4e-180 AT4G39230 369 / 2e-129 NmrA-like negative transcriptional regulator family protein (.1) Lus10042311 [exp] 457 / 2e-163 AT4G39230 489 / 4e-176 NmrA-like negative transcriptional regulator family protein (.1) Lus10026351 [exp] 453 / 6e-162 AT4G39230 481 / 4e-173 NmrA-like negative transcriptional regulator family protein (.1) Lus10026350 [exp] 443 / 6e-158 AT4G39230 454 / 3e-162 NmrA-like negative transcriptional regulator family protein (.1) Lus10040442 [exp] 415 / 8e-147 AT4G39230 462 / 2e-165 NmrA-like negative transcriptional regulator family protein (.1) Lus10023557 [exp] 417 / 2e-145 AT4G39230 461 / 2e-162 NmrA-like negative transcriptional regulator family protein (.1) Lus10023558 [exp] 293 / 8e-99 AT4G34540 405 / 7e-143 NmrA-like negative transcriptional regulator family protein (.1) Lus10042312 [exp] 259 / 5e-86 AT4G39230 253 / 1e-83 NmrA-like negative transcriptional regulator family protein (.1) Lus10010403 [exp] 260 / 9e-86 AT1G32100 446 / 1e-158 pinoresinol reductase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G118100 [exp] 466 / 3e-167 AT4G39230 501 / 0.0 NmrA-like negative transcriptional regulator family protein (.1) Potri.009G118300 [exp] 447 / 2e-159 AT4G39230 488 / 8e-176 NmrA-like negative transcriptional regulator family protein (.1) Potri.002G034400 [exp] 441 / 3e-157 AT1G75280 467 / 2e-167 NmrA-like negative transcriptional regulator family protein (.1) Potri.005G228700 [exp] 439 / 2e-156 AT1G75280 451 / 3e-161 NmrA-like negative transcriptional regulator family protein (.1) Potri.011G168400 [exp] 408 / 1e-143 AT4G39230 448 / 2e-159 NmrA-like negative transcriptional regulator family protein (.1) Potri.007G036500 [exp] 387 / 9e-136 AT4G39230 407 / 1e-143 NmrA-like negative transcriptional regulator family protein (.1) Potri.009G118000 [exp] 299 / 3e-101 AT4G34540 432 / 7e-154 NmrA-like negative transcriptional regulator family protein (.1) Potri.007G123700 [exp] 293 / 1e-98 AT1G75280 284 / 4e-95 NmrA-like negative transcriptional regulator family protein (.1) Potri.004G156650 [exp] 283 / 3e-96 AT4G39230 322 / 1e-111 NmrA-like negative transcriptional regulator family protein (.1) Potri.001G133200 [exp] 271 / 3e-90 AT1G32100 410 / 6e-145 pinoresinol reductase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF05368 [flax] [poplar] NmrA NmrA-like family
Representative CDS sequence Show only first row Show all	>Lus10026348 pacid=23156534 polypeptide=Lus10026348 locus=Lus10026348.g ID=Lus10026348.BGIv1.0 annot-version=v1.0 ATGGCAGAGAAGTCCAAGATTCTGATCATCGGAGGAACAGGGTACATCGGAAAACACATCGTTGAAGCCAGCGCCAAGGCTGGAAATCCCACTTTTGCCC TCGTCAGAGACGCCACTCTTTCCACCAAATCCGCCCTCGTCGACTCCTTCAAGTCACTCGGCGTCACCATCGTCCTCGGAGATGTTGACGATCATGAAGG GTTGGTTAAGGCGATCAAACAAGTGGATGTTGTGATCTCCACACTTGGCCAGCAAATCCCCGATCAGGTTAAGATCATCGCCGCCATTAAAGAAGCTGGA AATGTCAAGAGATTTTTGCCGTCGGAGTTCGGGAACGACGTGGACCGGAGCAGGGCAGTGGAGCCGGTCAAATCAGTGTTTGCCGAGAAGGTGAAGATCA GGCGGGCAGTTGAGGAAGCAGGGATTCCATACACAATCGTCTCTTCCAACTGCTTCGCCGGATACTTCCTCCCCAATTTCAACCAGCCAGGAGCCACTTC TCCTCCCAGGGACAAAGTAGTCATTCTCGGGGACGGAACCGCCAAGGCCGTATACAACAAGGAGGAAGACATTGGCACGTTCACGATCAAAGCTGCAGAG GATCCCAGAACGTTGAACAAGATCGTGTACATTAGGCCGCCCGTTAACACTTACTCCTTCAATGACCTTGTGGCTCTGTGGGAGAAAAAGATTGGGAAAA CTTTGGAGAAGGTGTTTATTCCAGAGGAGCAAATCCTGAAGAACATCCAAGAAGCTGCAATTCCGATGAACATAATATTTTCGCTGGGACATGCGGTGTT CGTGCTAGGTGATCAGACCTACTTTGAGATCGAGCCGTCATTTGGGGCAGAGGCGTCTGAGCTTTACCCTGATGTTAAGTACACCACTGTGGATGAATAT CTCGACCAGTTTGTCTAA
AA sequence Show only first row Show all	>Lus10026348 pacid=23156534 polypeptide=Lus10026348 locus=Lus10026348.g ID=Lus10026348.BGIv1.0 annot-version=v1.0 MAEKSKILIIGGTGYIGKHIVEASAKAGNPTFALVRDATLSTKSALVDSFKSLGVTIVLGDVDDHEGLVKAIKQVDVVISTLGQQIPDQVKIIAAIKEAG NVKRFLPSEFGNDVDRSRAVEPVKSVFAEKVKIRRAVEEAGIPYTIVSSNCFAGYFLPNFNQPGATSPPRDKVVILGDGTAKAVYNKEEDIGTFTIKAAE DPRTLNKIVYIRPPVNTYSFNDLVALWEKKIGKTLEKVFIPEEQILKNIQEAAIPMNIIFSLGHAVFVLGDQTYFEIEPSFGAEASELYPDVKYTTVDEY LDQFV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39230			NmrA-like negative transcripti...		Lus10026348 [exp]	0	1
AT5G54800		ATGPT1, GPT1	ARABIDOPSIS GLUCOSE 6-PHOSPHAT...		Lus10011155 [exp]	1.4	0.9690
AT4G39230			NmrA-like negative transcripti...		Lus10042313 [exp]	2.0	0.9654
AT2G40370		LAC5	laccase 5 (.1)		Lus10017426 [exp]	3.2	0.9609
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10018208 [exp]	3.9	0.9645
AT1G22410			Class-II DAHP synthetase famil...		Lus10035923 [exp]	5.3	0.9619
AT5G38450		CYP735A1	"cytochrome P450, family 735, ...		Lus10017595 [exp]	6.0	0.9522
AT4G34050		CCoAOMT1	caffeoyl coenzyme A O-methyltr...		Lus10019841 [exp]	8.5	0.9541
AT3G49750		AtRLP44	receptor like protein 44 (.1)		Lus10019277 [exp]	9.4	0.9542
AT1G51680		AT4CL1, 4CL.1, ...	ARABIDOPSIS THALIANA 4-COUMARA...		Lus10008677 [exp]	10.6	0.9487
AT3G60890		ZPR2	LITTLE ZIPPER 2, protein bindi...		Lus10008913 [exp]	12.2	0.9537

Compare expression of checked genes

Lus10026348 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.