Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42020 56 / 7e-11 BIP2, BIP luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT5G28540 55 / 2e-10 BIP1 heat shock protein 70 (Hsp 70) family protein (.1) AT1G09080 50 / 6e-09 BIP3 binding protein 3, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT1G56410 47 / 9e-08 HSP70T-1, ERD2 HEAT SHOCK PROTEIN 70T-1, EARLY-RESPONSIVE TO DEHYDRATION 2, heat shock protein 70 (Hsp 70) family protein (.1) AT3G09440 44 / 2e-06 Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT5G02490 42 / 7e-06 AtHsp70-2 Heat shock protein 70 (Hsp 70) family protein (.1) AT5G02500 41 / 1e-05 AtHsp70-1, AT-HSC70-1, HSP70-1, HSC70-1 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) AT3G12580 41 / 1e-05 ATHSP70, HSP70 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) AT1G16030 41 / 1e-05 HSP70B heat shock protein 70B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013055 [exp] 71 / 6e-16 AT1G09080 332 / 8e-107 binding protein 3, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Lus10023043 [exp] 62 / 7e-13 AT1G64550 1249 / 0.0 susceptible to coronatine-deficient Pst DC3000 5, general control non-repressible 20, ATP-binding cassette F3, general control non-repressible 3 (.1) Lus10019915 [exp] 62 / 8e-13 AT5G28540 321 / 2e-101 heat shock protein 70 (Hsp 70) family protein (.1) Lus10015483 [exp] 61 / 1e-12 AT5G28540 758 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10023016 [exp] 61 / 1e-12 AT5G28540 246 / 9e-77 heat shock protein 70 (Hsp 70) family protein (.1) Lus10032430 [exp] 61 / 2e-12 AT5G42020 1033 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Lus10029103 [exp] 59 / 7e-12 AT5G28540 615 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10020977 [exp] 59 / 1e-11 AT5G28540 779 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10028061 [exp] 56 / 6e-11 AT5G28540 664 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G143600 [exp] 61 / 2e-12 AT5G42020 1205 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.012G017600 [exp] 61 / 2e-12 AT5G28540 1093 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.001G087500 [exp] 60 / 4e-12 AT5G42020 1184 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.013G018000 [exp] 45 / 4e-07 AT5G28540 991 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.010G205800 [exp] 41 / 2e-05 AT5G02500 1142 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.003G184000 [exp] 40 / 3e-05 AT3G12580 1040 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.010G206600 [exp] 40 / 3e-05 AT3G12580 1181 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.008G054600 [exp] 40 / 3e-05 AT5G02500 1149 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.008G054000 [exp] 39 / 5e-05 AT5G02500 1160 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.008G054700 [exp] 39 / 7e-05 AT5G02500 920 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF00012 [flax] [poplar] HSP70 Hsp70 protein
Representative CDS sequence Show only first row Show all	>Lus10026349 pacid=23156404 polypeptide=Lus10026349 locus=Lus10026349.g ID=Lus10026349.BGIv1.0 annot-version=v1.0 ATGGCCAAGAAAGACAAGATAGCCAAAGCCCGTGTGGATGCCAGGAACTGTCTGGAGCAGTATATCTACCAGGTCAAGAATGACACAAGTAATGGAGACA GCAAATTGAAGAGGGAGTTGGAAGAAGCTTCTGGCTGGTTAGGTGATAACCAACACGCTATCAAGGAGGATTTTGAGAAGAAACTCAAGCAACTCCAACA TGTTTGGAATCATCCAATATGA
AA sequence Show only first row Show all	>Lus10026349 pacid=23156404 polypeptide=Lus10026349 locus=Lus10026349.g ID=Lus10026349.BGIv1.0 annot-version=v1.0 MAKKDKIAKARVDARNCLEQYIYQVKNDTSNGDSKLKRELEEASGWLGDNQHAIKEDFEKKLKQLQHVWNHPI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42020		BIP2, BIP	luminal binding protein, Heat ...		Lus10026349 [exp]	0	1
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Lus10030020 [exp]	5.7	0.8507
AT1G23420	YABBY	INO, YAB4	INNER NO OUTER, Plant-specific...		Lus10030596 [exp]	8.4	0.8468
AT1G29110			Cysteine proteinases superfami...		Lus10018586 [exp]	8.7	0.7345
					Lus10022721 [exp]	10.1	0.8236
AT2G47190	MYB	AtMYB2	myb domain protein 2 (.1)		Lus10038062 [exp]	12.0	0.8221
AT1G26560		BGLU40	beta glucosidase 40 (.1)		Lus10036885 [exp]	15.1	0.8136
AT2G47190	MYB	AtMYB2	myb domain protein 2 (.1)		Lus10009996 [exp]	17.7	0.8037
					Lus10021407 [exp]	17.7	0.7984
AT5G48540			receptor-like protein kinase-r...		Lus10025875 [exp]	17.7	0.8146
AT4G30700			Pentatricopeptide repeat (PPR)...		Lus10036596 [exp]	23.6	0.7845

Compare expression of checked genes

Lus10026349 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.