Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39230 454 / 2e-162 NmrA-like negative transcriptional regulator family protein (.1) AT1G75290 430 / 1e-152 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G75280 425 / 1e-150 NmrA-like negative transcriptional regulator family protein (.1) AT1G75300 405 / 8e-143 NmrA-like negative transcriptional regulator family protein (.1) AT1G19540 374 / 7e-131 NmrA-like negative transcriptional regulator family protein (.1) AT4G34540 303 / 9e-103 NmrA-like negative transcriptional regulator family protein (.1) AT1G32100 259 / 3e-85 ATPRR1 pinoresinol reductase 1 (.1) AT4G13660 249 / 2e-81 ATPRR2 pinoresinol reductase 2 (.1) AT5G18660 42 / 0.0006 PCB2, DVR PALE-GREEN AND CHLOROPHYLL B REDUCED 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042311 [exp] 469 / 5e-168 AT4G39230 489 / 4e-176 NmrA-like negative transcriptional regulator family protein (.1) Lus10026351 [exp] 462 / 2e-165 AT4G39230 481 / 4e-173 NmrA-like negative transcriptional regulator family protein (.1) Lus10026348 [exp] 443 / 4e-158 AT4G39230 442 / 2e-157 NmrA-like negative transcriptional regulator family protein (.1) Lus10040442 [exp] 434 / 1e-154 AT4G39230 462 / 2e-165 NmrA-like negative transcriptional regulator family protein (.1) Lus10023557 [exp] 432 / 3e-151 AT4G39230 461 / 2e-162 NmrA-like negative transcriptional regulator family protein (.1) Lus10042313 [exp] 362 / 1e-126 AT4G39230 369 / 2e-129 NmrA-like negative transcriptional regulator family protein (.1) Lus10042312 [exp] 340 / 5e-118 AT4G39230 253 / 1e-83 NmrA-like negative transcriptional regulator family protein (.1) Lus10023558 [exp] 312 / 4e-106 AT4G34540 405 / 7e-143 NmrA-like negative transcriptional regulator family protein (.1) Lus10012145 [exp] 265 / 1e-87 AT1G32100 419 / 2e-148 pinoresinol reductase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G118100 [exp] 503 / 0 AT4G39230 501 / 0.0 NmrA-like negative transcriptional regulator family protein (.1) Potri.009G118300 [exp] 464 / 4e-166 AT4G39230 488 / 8e-176 NmrA-like negative transcriptional regulator family protein (.1) Potri.011G168400 [exp] 452 / 4e-161 AT4G39230 448 / 2e-159 NmrA-like negative transcriptional regulator family protein (.1) Potri.002G034400 [exp] 440 / 7e-157 AT1G75280 467 / 2e-167 NmrA-like negative transcriptional regulator family protein (.1) Potri.005G228700 [exp] 439 / 3e-156 AT1G75280 451 / 3e-161 NmrA-like negative transcriptional regulator family protein (.1) Potri.007G036500 [exp] 407 / 2e-143 AT4G39230 407 / 1e-143 NmrA-like negative transcriptional regulator family protein (.1) Potri.004G156650 [exp] 315 / 6e-109 AT4G39230 322 / 1e-111 NmrA-like negative transcriptional regulator family protein (.1) Potri.009G118000 [exp] 299 / 4e-101 AT4G34540 432 / 7e-154 NmrA-like negative transcriptional regulator family protein (.1) Potri.001G133300 [exp] 285 / 2e-95 AT1G32100 462 / 2e-165 pinoresinol reductase 1 (.1) Potri.007G123700 [exp] 282 / 2e-94 AT1G75280 284 / 4e-95 NmrA-like negative transcriptional regulator family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF05368 [flax] [poplar] NmrA NmrA-like family
Representative CDS sequence Show only first row Show all	>Lus10026350 pacid=23156613 polypeptide=Lus10026350 locus=Lus10026350.g ID=Lus10026350.BGIv1.0 annot-version=v1.0 ATGGCGGGGAATAACAAGAGCCGGATTCTGTTCATAGGAGGCACGGGCTACATCGGAAAGTACATAGTTGAAGCTAGCGCCAAATCAGGTCACCCTACTT TTCTCCTCCTCAGAGATTCCACTCTCTCTGCCCCCAACAAGTCCGCCCTCATCGACAAATTCAAGTCCCTCGGCGTCAATTTCCTCATCGGAGATCTTTA TGATCACGAGAGCTTGGTGAAGGCGATAAAACAAGTGGATGTGGTGATTTCTACTCTGGGTCACGCTCAGCTTCCTGATCAAGTCCGGATAGTCTCTGCC ATTAAAGAAGCTGGTAACATTAAGAGATTCTTCCCATCAGAGTTTGGGAATGATGTGGATCATGTTAATGCTGTGGAGCCGGCAAAAACTGCATTTGGCG CCAAGGCTAAAGTACGCCGTGTTATTGAGTCCGATGGGATTCCATTTACGTACGTGTGCTCCAATCTTTTCGATGGTCTCTTCCTTGCCTCGTTGACCCA GCTAGAAGCCACCACTCCACCGCGGGACAAAGTTGTTATATTTGGTGACGGCAACCCAAAAGCAATTTTTAACAAGGAAGAGGATATTGCGACCTATACC ATCAAAGCTGTAGATGATCCAAGAACCTTGAACAAGGCTCTCTACGTTAGACCACCAGGCAACATAATATCCCTAAATGATCTCGTGTCCTTGTGGGAGA AGAAGATTGGGAAAACCGTTGAAAAGACTTACATCTCAGAGGAACAACTTCTGAAGAACATCCAAGAATCTGCAACTCCAATGAATGTGATACTCTCGAT TCGTCACTCTGTGTTCGTGAAGGGAGATCAAACCAACTTTGAAATCGAACCTTCATTTGGAATAGAAGCCTCACAGCTTTACCCCGACGTCAAATACACC AGGGTGGAGGAGTACCTTGACCAATTTGTCTGA
AA sequence Show only first row Show all	>Lus10026350 pacid=23156613 polypeptide=Lus10026350 locus=Lus10026350.g ID=Lus10026350.BGIv1.0 annot-version=v1.0 MAGNNKSRILFIGGTGYIGKYIVEASAKSGHPTFLLLRDSTLSAPNKSALIDKFKSLGVNFLIGDLYDHESLVKAIKQVDVVISTLGHAQLPDQVRIVSA IKEAGNIKRFFPSEFGNDVDHVNAVEPAKTAFGAKAKVRRVIESDGIPFTYVCSNLFDGLFLASLTQLEATTPPRDKVVIFGDGNPKAIFNKEEDIATYT IKAVDDPRTLNKALYVRPPGNIISLNDLVSLWEKKIGKTVEKTYISEEQLLKNIQESATPMNVILSIRHSVFVKGDQTNFEIEPSFGIEASQLYPDVKYT RVEEYLDQFV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39230			NmrA-like negative transcripti...		Lus10026350 [exp]	0	1
AT2G21270		UFD1	ubiquitin fusion degradation 1...		Lus10004970 [exp]	1.0	0.8953
AT4G39230			NmrA-like negative transcripti...		Lus10026351 [exp]	2.4	0.8798
AT3G47570			Leucine-rich repeat protein ki...		Lus10043368 [exp]	14.5	0.8599
AT3G21865		PEX22	peroxin 22 (.1)		Lus10027155 [exp]	16.5	0.8840
AT5G46250			RNA-binding protein (.1.2.3)		Lus10023315 [exp]	16.7	0.8727
					Lus10003603 [exp]	32.1	0.8724
					Lus10005731 [exp]	38.3	0.8642
AT5G07920		ATDGK1, DGK1	DIACYLGLYCEROL KINASE 1, diacy...		Lus10003460 [exp]	40.5	0.8320
AT1G79610		ATNHX6	Na+/H+ antiporter 6, ARABIDOPS...		Lus10038727 [exp]	43.4	0.8254
AT2G01170		BAT1	bidirectional amino acid trans...		Lus10039616 [exp]	56.2	0.8650

Compare expression of checked genes

Lus10026350 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.