Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39230 482 / 3e-173 NmrA-like negative transcriptional regulator family protein (.1) AT1G75280 431 / 4e-153 NmrA-like negative transcriptional regulator family protein (.1) AT1G75290 422 / 2e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G75300 398 / 7e-140 NmrA-like negative transcriptional regulator family protein (.1) AT1G19540 367 / 5e-128 NmrA-like negative transcriptional regulator family protein (.1) AT4G34540 304 / 3e-103 NmrA-like negative transcriptional regulator family protein (.1) AT1G32100 252 / 1e-82 ATPRR1 pinoresinol reductase 1 (.1) AT4G13660 238 / 4e-77 ATPRR2 pinoresinol reductase 2 (.1) AT4G00560 41 / 0.0005 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3), NAD(P)-binding Rossmann-fold superfamily protein (.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042311 [exp] 616 / 0 AT4G39230 489 / 4e-176 NmrA-like negative transcriptional regulator family protein (.1) Lus10026350 [exp] 462 / 2e-165 AT4G39230 454 / 3e-162 NmrA-like negative transcriptional regulator family protein (.1) Lus10026348 [exp] 454 / 4e-162 AT4G39230 442 / 2e-157 NmrA-like negative transcriptional regulator family protein (.1) Lus10040442 [exp] 430 / 1e-152 AT4G39230 462 / 2e-165 NmrA-like negative transcriptional regulator family protein (.1) Lus10023557 [exp] 429 / 5e-150 AT4G39230 461 / 2e-162 NmrA-like negative transcriptional regulator family protein (.1) Lus10042313 [exp] 373 / 1e-130 AT4G39230 369 / 2e-129 NmrA-like negative transcriptional regulator family protein (.1) Lus10023558 [exp] 324 / 6e-111 AT4G34540 405 / 7e-143 NmrA-like negative transcriptional regulator family protein (.1) Lus10042312 [exp] 270 / 3e-90 AT4G39230 253 / 1e-83 NmrA-like negative transcriptional regulator family protein (.1) Lus10012147 [exp] 259 / 3e-85 AT1G32100 383 / 1e-133 pinoresinol reductase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G118100 [exp] 498 / 7e-180 AT4G39230 501 / 0.0 NmrA-like negative transcriptional regulator family protein (.1) Potri.009G118300 [exp] 475 / 2e-170 AT4G39230 488 / 8e-176 NmrA-like negative transcriptional regulator family protein (.1) Potri.011G168400 [exp] 434 / 5e-154 AT4G39230 448 / 2e-159 NmrA-like negative transcriptional regulator family protein (.1) Potri.002G034400 [exp] 433 / 5e-154 AT1G75280 467 / 2e-167 NmrA-like negative transcriptional regulator family protein (.1) Potri.005G228700 [exp] 426 / 3e-151 AT1G75280 451 / 3e-161 NmrA-like negative transcriptional regulator family protein (.1) Potri.007G036500 [exp] 395 / 1e-138 AT4G39230 407 / 1e-143 NmrA-like negative transcriptional regulator family protein (.1) Potri.009G118000 [exp] 317 / 3e-108 AT4G34540 432 / 7e-154 NmrA-like negative transcriptional regulator family protein (.1) Potri.004G156650 [exp] 303 / 3e-104 AT4G39230 322 / 1e-111 NmrA-like negative transcriptional regulator family protein (.1) Potri.001G133200 [exp] 287 / 2e-96 AT1G32100 410 / 6e-145 pinoresinol reductase 1 (.1) Potri.001G133300 [exp] 275 / 2e-91 AT1G32100 462 / 2e-165 pinoresinol reductase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF05368 [flax] [poplar] NmrA NmrA-like family
Representative CDS sequence Show only first row Show all	>Lus10026351 pacid=23156486 polypeptide=Lus10026351 locus=Lus10026351.g ID=Lus10026351.BGIv1.0 annot-version=v1.0 ATGGCGGAGGAAGAAGAGAAGACGAAGATTTTAGTAATTGGAGGAACAGGGTACATAGGGAGATACGTAGTGGAAGCTAGCGCCAAGGCAGGTAACCCCA CTTACGCTCTCGTCAGGCAGTCCACTCTTTCCAGCCCTACCAAATCCAAGGTCATCGAAAGCTTCAAATCTCACGGTGTCAAATTCCTCATTGGGGATCT GAAAGATAGCGAGAATTTGGTGAAGGTGCTGAAGATGGTGGATGTTGTGATCTCTACCGTTGGTCATGCTCACCTGGCTGACCAAGAGAAGATCATCTCC GCCATTAAGCAAGCTGGCAACATCAAGAGATTCTTGCCTTCTGAGTTTGGGAACGATGTGGACCGGGTTCATACGGTGGAGCCAGCGAAAACTGCATATG CTACGAAAGTGAAAATCCGACGAGCCATAGAGGCGGCAGGCATCCCGTACACATATGTCTCCTGTAACTTCTTTGCAGGTTACTTTCTCCCAACTCTAAA CCAGCCTGGTATAACCACTCCTCCTCGTGATAAAGTTGTCATTTTGGGCGATGGAACCCCAAAAGCAATTTTCAACAAGGAAGAGGATATAGGAATCTAC ACTATCAAAGCAGTGGATGATCCGAGAACGTTGAACAAGATCTTGTACATTAGGCCGCCCGCCAATACCATATCCTTCAACGACCTTGTTTCCTTGTGGG AGAAGAAGATTGGCAAGACCCTCGAGAGAAGTTACATCTCCGAAGAACAACTTCTCAACAATATCCGAGAGTCTTCACCTCCCCTGAATGTGATACTTCC AATTGGGTACTCGGTGTTCGTCAAGGGAGATCACACCAACTTCCTGATTGAACCTTCATTTGGAGTGGAAGCTTCTGAGCTTTACCCTGATGTCAAGTAC ACAACTGTGGATGAGTATCTGAGCCAATTTGTCTGA
AA sequence Show only first row Show all	>Lus10026351 pacid=23156486 polypeptide=Lus10026351 locus=Lus10026351.g ID=Lus10026351.BGIv1.0 annot-version=v1.0 MAEEEEKTKILVIGGTGYIGRYVVEASAKAGNPTYALVRQSTLSSPTKSKVIESFKSHGVKFLIGDLKDSENLVKVLKMVDVVISTVGHAHLADQEKIIS AIKQAGNIKRFLPSEFGNDVDRVHTVEPAKTAYATKVKIRRAIEAAGIPYTYVSCNFFAGYFLPTLNQPGITTPPRDKVVILGDGTPKAIFNKEEDIGIY TIKAVDDPRTLNKILYIRPPANTISFNDLVSLWEKKIGKTLERSYISEEQLLNNIRESSPPLNVILPIGYSVFVKGDHTNFLIEPSFGVEASELYPDVKY TTVDEYLSQFV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39230			NmrA-like negative transcripti...		Lus10026351 [exp]	0	1
AT3G52120			SWAP (Suppressor-of-White-APri...		Lus10015703 [exp]	1.4	0.8815
AT2G21270		UFD1	ubiquitin fusion degradation 1...		Lus10004970 [exp]	2.4	0.8598
AT1G11410			S-locus lectin protein kinase ...		Lus10005053 [exp]	2.4	0.8274
AT4G39230			NmrA-like negative transcripti...		Lus10026350 [exp]	2.4	0.8798
AT5G07920		ATDGK1, DGK1	DIACYLGLYCEROL KINASE 1, diacy...		Lus10003460 [exp]	4.0	0.8538
AT1G70740			Protein kinase superfamily pro...		Lus10001595 [exp]	4.4	0.8055
AT1G16040			unknown protein		Lus10015585 [exp]	5.2	0.8206
AT1G01770			unknown protein		Lus10036349 [exp]	6.3	0.8336
AT3G47300		SELT	SELT-like protein precursor (....		Lus10018247 [exp]	8.1	0.8109
AT3G55640			Mitochondrial substrate carrie...		Lus10004689 [exp]	8.8	0.8119

Compare expression of checked genes

Lus10026351 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.