Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48530 118 / 5e-29 KING1 SNF1-related protein kinase regulatory subunit gamma 1 (.1) AT1G69800 86 / 7e-18 Cystathionine beta-synthase (CBS) protein (.1), Cystathionine beta-synthase (CBS) protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042308 [exp] 741 / 0 AT3G48530 125 / 1e-31 SNF1-related protein kinase regulatory subunit gamma 1 (.1) Lus10022458 [exp] 109 / 8e-26 AT3G48530 579 / 0.0 SNF1-related protein kinase regulatory subunit gamma 1 (.1) Lus10016763 [exp] 108 / 1e-25 AT3G48530 578 / 0.0 SNF1-related protein kinase regulatory subunit gamma 1 (.1) Lus10013265 [exp] 77 / 9e-15 AT1G69800 536 / 0.0 Cystathionine beta-synthase (CBS) protein (.1), Cystathionine beta-synthase (CBS) protein (.2) Lus10030788 [exp] 65 / 4e-11 AT1G69800 491 / 4e-173 Cystathionine beta-synthase (CBS) protein (.1), Cystathionine beta-synthase (CBS) protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G118700 [exp] 462 / 6e-161 AT3G48530 111 / 9e-27 SNF1-related protein kinase regulatory subunit gamma 1 (.1) Potri.015G094700 [exp] 129 / 1e-32 AT3G48530 627 / 0.0 SNF1-related protein kinase regulatory subunit gamma 1 (.1) Potri.012G097000 [exp] 127 / 4e-32 AT3G48530 572 / 0.0 SNF1-related protein kinase regulatory subunit gamma 1 (.1) Potri.017G053600 [exp] 70 / 9e-13 AT1G69800 370 / 5e-125 Cystathionine beta-synthase (CBS) protein (.1), Cystathionine beta-synthase (CBS) protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00571 [flax] [poplar] CBS CBS domain
Representative CDS sequence Show only first row Show all	>Lus10026352 pacid=23156392 polypeptide=Lus10026352 locus=Lus10026352.g ID=Lus10026352.BGIv1.0 annot-version=v1.0 ATGGAAGTTGGGGGAGAAGATGATGGAATGAAGAAGCAAGATATTCTGGATTCAAACTTCATGACAGATCTCAAACAACAACAAATAACCCACACACAAA AGCAGCTGGATTCAGGGGCTGCTCTTCAGGCATTTCTCGATCACATTCCCATCAATGCCATCCCTGGAATTCAAAACTCTTCTTCTGTTATGGAGGTGAA AGCTGGAGAGTCGGTCGAAGACGCAATAGAGATGCTGTACAAGAAGAACGTATCGGGCGCTCCAATTGCAGACTTAATCGACTCCGAGAACGTGAGCGGG AGGGTTTCAGATCGGTACATGGGTTTCATTGATTTAGCCAGGATGCTTCTTTGGTGTTTCCACAAATGTGATTATAAGCCTCATAATAATCACACCACCA CCTCCTCCACCAATACTCTCGACAGCTTTTTCGCAATGCTCCGCCACAATCCTGACATTGCAGAAACAAAGGTGGGAGAGTTGGCAAAGTCGTTTCTATG GGATCCATTTTTCCCAGTTCATCTGGAAGATACCTTGTTTCATGTCCTGCTGCTTTTCTGCAAGCACCAGCTCCAAGTAGTTCCTGTGGTGGTGAAATCC GAACTTCAAGTCATTGGCTTTGTCACTCAGGCACCATACTTCAAACCCTACCCTTTTCATTTTTTTGGTTTCTTTCCTCAGTTGCTAACTCGTCTTAATG CAGTAATTCAGTTGCTGCTTCAATCGGCTGGGCTTGAATGGTTCGATGCTATTGCTGACAAGCCTTTATCAGAATACCGAGAGGATCATCTTATAACTGT GTATGGAGATCAGAGCTTATCAGAAGCTCTCCGCCTACTATGGGAAAGCCAAATCGGTGTCGTTGCAGTCGTAAGCCGAGGGAATGGCAGTGTCATAGGC TGCATCAGGAACAGTGATGCTTATCTCCTTGTCCAGAATACCAACTTATTCAGCAGCAGGAAGACCATAACAGCAGAGGAATTCATTCACACAGAGCCAG CAGATGGCGAGGATCCAACCATCGAGCGAGATCTCGGAGCGCTCCTTTCGGCAGGGACTCTCAAATTGAAGAATGCATTTCTTCCGAAGATGGATTCGGT AGTTACCAACAAAAGGAGCGACACATTGAAGCAGGCCATGGTGGAGATGGCAAGGACAAACAGCAGCTTCAGTTTCCTGGTCGATGGGTCGAATAATCGG CCCACGGGGGTCCTCACTTCGCGAGATGTGATCGTTCAGTTTGCTCCACCGTGTATGGATTCCAGCTTCCAAGGAGGTGGGTTCTTCGATTTTGCACTGG AACAAGCGGGATGCCATGAGAAGAATGGGACTGTTGTGTGTAATCGACGAGCTTCGTCTTCTGCTAGACTTGTAAAAGCAACTGATGCTGCTGCATCTTC TAACTAG
AA sequence Show only first row Show all	>Lus10026352 pacid=23156392 polypeptide=Lus10026352 locus=Lus10026352.g ID=Lus10026352.BGIv1.0 annot-version=v1.0 MEVGGEDDGMKKQDILDSNFMTDLKQQQITHTQKQLDSGAALQAFLDHIPINAIPGIQNSSSVMEVKAGESVEDAIEMLYKKNVSGAPIADLIDSENVSG RVSDRYMGFIDLARMLLWCFHKCDYKPHNNHTTTSSTNTLDSFFAMLRHNPDIAETKVGELAKSFLWDPFFPVHLEDTLFHVLLLFCKHQLQVVPVVVKS ELQVIGFVTQAPYFKPYPFHFFGFFPQLLTRLNAVIQLLLQSAGLEWFDAIADKPLSEYREDHLITVYGDQSLSEALRLLWESQIGVVAVVSRGNGSVIG CIRNSDAYLLVQNTNLFSSRKTITAEEFIHTEPADGEDPTIERDLGALLSAGTLKLKNAFLPKMDSVVTNKRSDTLKQAMVEMARTNSSFSFLVDGSNNR PTGVLTSRDVIVQFAPPCMDSSFQGGGFFDFALEQAGCHEKNGTVVCNRRASSSARLVKATDAAASSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48530		KING1	SNF1-related protein kinase re...		Lus10026352 [exp]	0	1
AT3G23870			Protein of unknown function (D...		Lus10016636 [exp]	3.2	0.7954
AT3G51150			ATP binding microtubule motor ...		Lus10010624 [exp]	3.2	0.7639
AT1G79640			Protein kinase superfamily pro...		Lus10026108 [exp]	19.7	0.7464
AT3G03550			RING/U-box superfamily protein...		Lus10037264 [exp]	24.5	0.7060
AT5G42490			ATP binding microtubule motor ...		Lus10015449 [exp]	32.9	0.6702
AT2G37970		SOUL-1	SOUL heme-binding family prote...		Lus10000227 [exp]	33.8	0.6443
AT1G67720			Leucine-rich repeat protein ki...		Lus10037051 [exp]	33.9	0.7190
AT3G22420		ZIK3, WNK2, ATW...	ARABIDOPSIS THALIANA WITH NO K...		Lus10004904 [exp]	36.9	0.6978
AT3G30841			Cofactor-independent phosphogl...		Lus10034089 [exp]	47.1	0.7002
					Lus10002061 [exp]	49.9	0.6772

Compare expression of checked genes

Lus10026352 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.