Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34560 75 / 4e-16 unknown protein AT5G66440 50 / 2e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042306 [exp] 286 / 2e-98 AT5G66440 97 / 2e-24 unknown protein Lus10040435 [exp] 157 / 7e-48 AT5G66440 104 / 3e-27 unknown protein Lus10023551 [exp] 150 / 3e-45 AT5G66440 95 / 2e-23 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G157300 [exp] 118 / 1e-32 AT4G34560 107 / 9e-29 unknown protein Potri.009G119000 [exp] 114 / 3e-31 AT4G34560 90 / 8e-22 unknown protein Potri.005G120300 [exp] 63 / 2e-11 AT5G66440 134 / 4e-38 unknown protein Potri.007G021500 [exp] 53 / 4e-08 AT5G66440 147 / 6e-43 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026353 pacid=23156544 polypeptide=Lus10026353 locus=Lus10026353.g ID=Lus10026353.BGIv1.0 annot-version=v1.0 ATGGACTCTTTTAACCCTAATAACCTCAAGACCCTGAAAGCAAAGGCGGTCAAGAAGCACAAGAAATTCCAGAAGATCACCAAGCTGTTGAGGGCGCTGG AAATCATGGTATTCCTGGCCGTGGTCTCGAGCTGTTCGATTCAACTCCTTCCAGCAGCTTTTAAGAACTTGGTGGAGTATTTAAAGGACTTCTTAATCGT CCTCGCTAGCCCCAGGTTTGTGTTCGTGGTCGGGAACGTGATCGTGGTGGTTCTCTTCGCCAAGTCCGGTCAGCTCTCTGGCAGCTATGATGAAGAAGGA AAAGCAAGCAGCACGACAACATCAGATATTTATGAGGAATTCGTGGAGATGAGTGGAAAGAACTCTCAGGCCTTTGCTTCTGTTGGAAGTGTTGAAGAAG TGAAAAACAGAGGAAAACAGAGTGATAGCTTGGTGGTCAAGGAAGAGCATCATCCTGTTTCGTCAGTAAAGAGTTACGAGAGGAGCCAGTCAGAGAAGTT GACTATCCGGAAGCCGGAAAAGGAACTGAGGCGGTGTGTGACGGAGAAGTTGAGCAAAAAGAAGGGTTTGTTTCCAGAGGATGATATGAGTAACGAGGAG TTCAAGAGTGCAGTGGATGCCTTCATTGAAAGGCAGAAGAGGTTTCGAAAAGTTGAAGAAGAGGTTTCTGTATTTGTGGCCTGA
AA sequence Show only first row Show all	>Lus10026353 pacid=23156544 polypeptide=Lus10026353 locus=Lus10026353.g ID=Lus10026353.BGIv1.0 annot-version=v1.0 MDSFNPNNLKTLKAKAVKKHKKFQKITKLLRALEIMVFLAVVSSCSIQLLPAAFKNLVEYLKDFLIVLASPRFVFVVGNVIVVVLFAKSGQLSGSYDEEG KASSTTTSDIYEEFVEMSGKNSQAFASVGSVEEVKNRGKQSDSLVVKEEHHPVSSVKSYERSQSEKLTIRKPEKELRRCVTEKLSKKKGLFPEDDMSNEE FKSAVDAFIERQKRFRKVEEEVSVFVA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34560			unknown protein		Lus10026353 [exp]	0	1
AT5G66440			unknown protein		Lus10042306 [exp]	5.1	0.8830
AT4G32870			Polyketide cyclase/dehydrase a...		Lus10006042 [exp]	11.7	0.8716
AT2G15680		AtCML30	calmodulin-like 30, Calcium-bi...		Lus10014050 [exp]	17.7	0.8689
AT1G05510			Protein of unknown function (D...		Lus10022586 [exp]	19.9	0.8464
AT2G22475		GEM	GL2-EXPRESSION MODULATOR, GRAM...		Lus10010279 [exp]	20.2	0.8651
AT1G77290			Glutathione S-transferase fami...		Lus10029723 [exp]	22.4	0.8366
AT1G76040		CPK29	calcium-dependent protein kina...		Lus10017251 [exp]	22.4	0.8616
AT3G24770		CLE41	CLAVATA3/ESR-RELATED 41 (.1)		Lus10011868 [exp]	23.0	0.8603
AT1G58340		BCD1, ZRZ, ZF14	ZRIZI, BUSH-AND-CHLOROTIC-DWAR...		Lus10007231 [exp]	25.8	0.8490
AT4G15450			Senescence/dehydration-associa...		Lus10012957 [exp]	29.0	0.8584

Compare expression of checked genes

Lus10026353 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.