Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21540 538 / 0 ATSFH3 SEC14-like 3 (.1.2.3) AT4G36490 493 / 2e-170 ATSFH12 SEC14-like 12 (.1) AT4G34580 489 / 9e-169 SRH1, COW1 SHORT ROOT HAIR 1, CAN OF WORMS1, Sec14p-like phosphatidylinositol transfer family protein (.1) AT4G39180 488 / 3e-168 ATSEC14, SEC14 ARABIDOPSIS THALIANA SECRETION 14, Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT2G16380 440 / 1e-149 Sec14p-like phosphatidylinositol transfer family protein (.1) AT2G18180 418 / 6e-141 Sec14p-like phosphatidylinositol transfer family protein (.1) AT4G39170 412 / 5e-138 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT2G21520 405 / 1e-134 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G19650 379 / 3e-125 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT3G24840 343 / 1e-111 Sec14p-like phosphatidylinositol transfer family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042303 [exp] 865 / 0 AT2G21540 598 / 0.0 SEC14-like 3 (.1.2.3) Lus10040432 [exp] 749 / 0 AT2G21540 679 / 0.0 SEC14-like 3 (.1.2.3) Lus10023547 [exp] 744 / 0 AT2G21540 664 / 0.0 SEC14-like 3 (.1.2.3) Lus10025988 [exp] 461 / 6e-157 AT2G18180 662 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10028332 [exp] 453 / 5e-154 AT2G18180 657 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10041779 [exp] 437 / 2e-148 AT2G18180 645 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10042302 [exp] 426 / 2e-142 AT2G21520 910 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10026356 [exp] 405 / 5e-134 AT2G21520 925 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10040431 [exp] 400 / 6e-133 AT2G21520 921 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G119400 [exp] 606 / 0 AT2G21540 729 / 0.0 SEC14-like 3 (.1.2.3) Potri.004G157600 [exp] 605 / 0 AT2G21540 709 / 0.0 SEC14-like 3 (.1.2.3) Potri.005G119700 [exp] 506 / 6e-175 AT4G36490 726 / 0.0 SEC14-like 12 (.1) Potri.007G020300 [exp] 504 / 2e-174 AT4G36490 731 / 0.0 SEC14-like 12 (.1) Potri.009G119500 [exp] 432 / 1e-145 AT2G21520 975 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.002G032600 [exp] 408 / 5e-136 AT2G21520 731 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.004G157700 [exp] 407 / 6e-136 AT2G21520 908 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.005G230500 [exp] 372 / 6e-122 AT2G21520 756 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.002G243000 [exp] 330 / 2e-105 AT3G24840 638 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.011G168300 [exp] 297 / 3e-93 AT1G55690 710 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [flax] [poplar] UBA PF03765 [flax] [poplar] CRAL_TRIO_N CRAL/TRIO, N-terminal domain CL0512 [flax] [poplar] CRAL_TRIO PF00650 [flax] [poplar] CRAL_TRIO CRAL/TRIO domain
Representative CDS sequence Show only first row Show all	>Lus10026355 pacid=23156601 polypeptide=Lus10026355 locus=Lus10026355.g ID=Lus10026355.BGIv1.0 annot-version=v1.0 ATGGCTGATACAATGTCTGGAATTTACGACAAGAATAATCCTAGAGAAAATGAGTTGTTTCTTGAGGACGAGAGGAAGAAGAAGGCTGGATCGTTCAAGA AGAAGGCGATCAGCGCCTCGAACAAATTTAGGAACTCCCTCACCAAGAAAGGCCGCAGGAACAGCAAAGTCATGTCGGTTTCCATCGTGGATGACGTCAA TACCGAAGAACTGAAGGCTGTGGATGCATTCAGGCAGGCCCTCATCCTGGATGAGATGCTTCCTTCCAGACACGATGATCACCACTTGATGCTCAGGTTC CTTAAGGCCAGGAAGTTCGACATCGAGAAAGCCAAGTCAATGTGGGGGGATATGATCCGTTGGAGGCACGAGTTTGGTACCGATTCGATCTTGGAGGAGT TTGAGTTTAAGGAAGTGGATGAAGTGCTGCAGTACTATCCTCAAGGATACCATGGAGTCGACAAGGAAGGCCGCCCTGTTTACATCGAAAAGCTTGGAGA AGTTGACGCGAACAAGCTGGTGCAAGTGACATCGTTGGACCGATATGTGAAGTACCATGTTCAGGAGTTTGAGAAGGCCTTCACTTACAAGTTCCCTGCT TGTTCCATTGCTGCAAAGAAGCACATCGACCAAAGCACCACAATCATTGATGTCCAAGGGGTGGGGCTTAAGCAGTTCACTAAGACTGCCAGGGAGCTCA TTGGCCGCATCCAGAAGATCGATGGTGATAACTACCCTGAGACACTGAACAGGATGTTTGTGATCAATGGTGGTGCTGGCTTCAGGCTTCTGTGGAATAG TGTGAAACAGTTCCTGGACCCCAAAACTGCTTCCAAAATCAACGTTCTTGGAAGTAAGTACCAGAGCAAGTTGCTTGAAATGGTTCAGAACGGCGAGGGT AAATGTCACAGGAAAACATTGTCAGGAATTGAAGAGAAGTTAATCCCTGAAGATAAGGAGACCATCAAGACTGAAAATGTTTCGAACATTGAAGCAGAGG ACCTGAATGCTGTTCCTGTTCCTGAAGATTTTCCCATCGTCAACATGAAGAAAATCCCAAGGGACAATTACGAGAAGTCCATCCAAGTCTTTGAAAACAC CATAAACGTCGATTGGAGAGCTTCTTCAACAGCTGTTGCTGATCAGAACGAAGCGCTTGTTCTTCCAGCAAATGGGAAGCAGATGATGGGCGGGATAATG GCCGTGGTGATGGGTGTAGTAACCTTGGTTAAAATGACCAAGACAATGCCAAGGAAGCTAACTGAGGCAGCCATCTACGGCAGCAAGACTTACTACTCCG AATCCCTCAACGACCGGGCTGCATCATCTCAGCAACCTTCTAATTCCATCACCAGCTCGGATTACAAGAAGATGATGATCCGAATGGCAGAGGCGGAAGA GAAGCTGAACGTTCTCTGCTCGAAACCCGACGGGATGACTCCAGAGAAGGAAGCAATGCTGATGAATGCACTCCGGCGCACAGAAGCCCTGGAGAAGGAG CTTTCAGCTGCAAAGACGTTGCTTGAGGAAGCTGTAGCGAAGCAGGATGAACTCCTGGCTTACATTGAGAAAAAGAAGAACAAGAAGAAGAGGTTCTTCG GATTCTGA
AA sequence Show only first row Show all	>Lus10026355 pacid=23156601 polypeptide=Lus10026355 locus=Lus10026355.g ID=Lus10026355.BGIv1.0 annot-version=v1.0 MADTMSGIYDKNNPRENELFLEDERKKKAGSFKKKAISASNKFRNSLTKKGRRNSKVMSVSIVDDVNTEELKAVDAFRQALILDEMLPSRHDDHHLMLRF LKARKFDIEKAKSMWGDMIRWRHEFGTDSILEEFEFKEVDEVLQYYPQGYHGVDKEGRPVYIEKLGEVDANKLVQVTSLDRYVKYHVQEFEKAFTYKFPA CSIAAKKHIDQSTTIIDVQGVGLKQFTKTARELIGRIQKIDGDNYPETLNRMFVINGGAGFRLLWNSVKQFLDPKTASKINVLGSKYQSKLLEMVQNGEG KCHRKTLSGIEEKLIPEDKETIKTENVSNIEAEDLNAVPVPEDFPIVNMKKIPRDNYEKSIQVFENTINVDWRASSTAVADQNEALVLPANGKQMMGGIM AVVMGVVTLVKMTKTMPRKLTEAAIYGSKTYYSESLNDRAASSQQPSNSITSSDYKKMMIRMAEAEEKLNVLCSKPDGMTPEKEAMLMNALRRTEALEKE LSAAKTLLEEAVAKQDELLAYIEKKKNKKKRFFGF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21540		ATSFH3	SEC14-like 3 (.1.2.3)		Lus10026355 [exp]	0	1
AT1G69850		NTL1, ATNRT1:2	nitrate transporter 1:2 (.1)		Lus10015240 [exp]	6.7	0.8554
AT5G20860			Plant invertase/pectin methyle...		Lus10033621 [exp]	6.7	0.8684
					Lus10032489 [exp]	8.2	0.7323
AT5G45840			Leucine-rich repeat protein ki...		Lus10015277 [exp]	9.4	0.8571
AT2G20870			cell wall protein precursor, p...		Lus10018569 [exp]	11.8	0.8523
AT1G69850		NTL1, ATNRT1:2	nitrate transporter 1:2 (.1)		Lus10005417 [exp]	13.8	0.8408
AT2G36880		MAT3	methionine adenosyltransferase...		Lus10001395 [exp]	16.1	0.8097
AT5G63800		MUM2, BGAL6	MUCILAGE-MODIFIED 2, beta-gala...		Lus10033502 [exp]	16.4	0.8226
AT1G15360	AP2_ERF	WIN1, SHN1	WAX INDUCER 1, SHINE 1, Integr...		Lus10030097 [exp]	16.6	0.8507
AT1G78955		CAMS1	camelliol C synthase 1 (.1)		Lus10016441 [exp]	17.0	0.8495

Compare expression of checked genes

Lus10026355 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.