Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21520 822 / 0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT4G39170 775 / 0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G19650 594 / 0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G75370 557 / 0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT4G36490 537 / 0 ATSFH12 SEC14-like 12 (.1) AT2G21540 536 / 0 ATSFH3 SEC14-like 3 (.1.2.3) AT4G34580 516 / 6e-177 SRH1, COW1 SHORT ROOT HAIR 1, CAN OF WORMS1, Sec14p-like phosphatidylinositol transfer family protein (.1) AT4G39180 482 / 7e-164 ATSEC14, SEC14 ARABIDOPSIS THALIANA SECRETION 14, Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT2G18180 477 / 6e-162 Sec14p-like phosphatidylinositol transfer family protein (.1) AT2G16380 440 / 2e-147 Sec14p-like phosphatidylinositol transfer family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042302 [exp] 1089 / 0 AT2G21520 910 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10040431 [exp] 964 / 0 AT2G21520 921 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10023546 [exp] 951 / 0 AT2G21520 924 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10025988 [exp] 529 / 0 AT2G18180 662 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10040432 [exp] 521 / 4e-178 AT2G21540 679 / 0.0 SEC14-like 3 (.1.2.3) Lus10041779 [exp] 510 / 6e-175 AT2G18180 645 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10028332 [exp] 509 / 4e-174 AT2G18180 657 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10023547 [exp] 508 / 1e-173 AT2G21540 664 / 0.0 SEC14-like 3 (.1.2.3) Lus10024276 [exp] 493 / 5e-167 AT2G21520 602 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G119500 [exp] 860 / 0 AT2G21520 975 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.004G157700 [exp] 846 / 0 AT2G21520 908 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.002G032600 [exp] 699 / 0 AT2G21520 731 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.005G230500 [exp] 675 / 0 AT2G21520 756 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.005G119700 [exp] 602 / 0 AT4G36490 726 / 0.0 SEC14-like 12 (.1) Potri.007G020300 [exp] 579 / 0 AT4G36490 731 / 0.0 SEC14-like 12 (.1) Potri.009G119400 [exp] 560 / 0 AT2G21540 729 / 0.0 SEC14-like 3 (.1.2.3) Potri.004G157600 [exp] 547 / 0 AT2G21540 709 / 0.0 SEC14-like 3 (.1.2.3) Potri.002G243000 [exp] 416 / 8e-137 AT3G24840 638 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.001G471300 [exp] 392 / 7e-128 AT1G55690 714 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [flax] [poplar] UBA PF03765 [flax] [poplar] CRAL_TRIO_N CRAL/TRIO, N-terminal domain CL0512 [flax] [poplar] CRAL_TRIO PF00650 [flax] [poplar] CRAL_TRIO CRAL/TRIO domain
Representative CDS sequence Show only first row Show all	>Lus10026356 pacid=23156472 polypeptide=Lus10026356 locus=Lus10026356.g ID=Lus10026356.BGIv1.0 annot-version=v1.0 ATGTCTGGTCCGCTCGATCGGTTCGCAAGGCCTTGCTTTGAGGGGTTTTCAGGCGGAGATGAAAGCAGAGAAGAGAGGAGAGAGAGGAGAGAGAGGAAAT CTGATTTTGAGAACTCTGAGGATGAAAGGCGAACAAGGATTGGCTCACTGAAGAAGAAGGCCCTTAATGCGTCTACCAAGTTCAAGCATTCGCTTAAGAA AAAAAGTAGTAGAAGGAAGAGTGCTGATGGCAGGATTAGTTCTGTTTCCATTGAAGATGTGCGAGACCTTGAGGAAATGCAGGCTGTCGATGCATTTCGC CAGTCGCTGATCATGGACGAATTGCTTCCCGAAAGACATGACGATTATTACATGATGTTAAGATTCTTGAAAGCCAGAAAATTTGATAGTGAGAAAGCAA AGCACATGTGGGCTGATATGATTCAATGGAGGAAAGAATTTGGAACGGATACTATCACGGAGGAGTTTGAGTTTCCAGAACTGAATGAAGTATTGAAATA CTACCCTAATCTCTATCATGGCGTGGACAAAGAAGGGAGACCTGTCTATATGGAAAGATTGGGAAAAGTTGATCCTCACAAGCTAATGCAAGTTACAGAC ATGGACCGCTATGTAAAATACCATGTGCGTGAATTTGAGAAAAGCTTTCTGGTCAAGTTTCCTGCTTGCAGTATTGCTGCAAAGAGGCATATAGATTCAA GCACAACAATTTTAGATGTTCAAGGAGTGGGACTAAAGAACTTTACCAAGTCAGCTCGGGAACTAGTTATGCGGCTGCAGAAAATTGATGGTGACAATTA CCCTGAAACTCTGCATGAAATGTACATCATCAATGCTGGTGCTGGATTTAGGCTTTTGTGGAATACCATAAAGTCATTTCTAGATCCTAGAACGACCTCA AAGATCCATGTTATTGGAAACAAGTACCAGAGTAAATTGCTTGAGGTGATTGATGCCAGTGAATTGCCGGAATTTATGGGTGGTAGTTGTACATGTGCTG ATCAGGGAGGTTGTCTTCGCTCTGATAAAGGACCATGGAGGAATCAAGATATACTGAAGATGGTTCTTGATGGTGGAGCACGACGCGCTAGGCAAGTTGT AAAAATTCTAAACAACGAGGGTAAGGTCATTACCTATGCAAAGCCTCCTTATTACCCAATGGTGAAAGGAAGTGACTCTTCTGCTGCTGAGTCTGGGTCA GAAGCTGAAGATATTGCTTCCCCCAAGGCACTTAAGGCCTACTCACAGCTGCGCTTGACTCCTGTCCGTGAAGAAGCTAAGATAATGGGCAAGGCAAATC ATCCTAGTAGCTTTCCTGGGTTTGATGAATACATTCCCATCGTTGACAAAGCAGTTGACTCTACTTGGAGTGAGCAAACAGTTTTGAAGAAGCTCGAAAT TTCCAAAGCTAAAGAAGTGATATCTACTTCTATTGCATCAACTGTTCCTGAAGCTCCAAAGACATCCGAAGCTATCCATACTCGCATTTGGTTAGCAGTC CTAGCTTTGTTCATTACCATTCTAAATCTTGTTCGATCACTGCCATCCCGTATGAGCAAGACGAATTCAGTGGTGGTCCCAAACCACAATGGAGCTTCAG CTGGAGGATTTGTTGTTGAGTCAGCAGAGGAGTTGAATCGTCCACCTTCGCCAGCTCCTGGTTACACAGATGCTGACCTTCTGACTTGTGTGTTGAAAAG GCTAAGTGAAGTCGAGGAGAAAGTAGACACACTTCAAGCAAAGCCACTAAAGATGCCTTACGAGAAAGAGGAGTTGCTGAATGCTGCTGTTTGCCGTGTG GATGGGTTGGAAGCAGAACTTATTGCCACTAAAAAGGCTCTGCATGAAGCGCTGATGAGACAAGAAGAACTTCTTGCTTACATCGACAGTCAAGAAGATG CGAAATATCGGGTAAGCATTTCCGAAGATGATGATGATCTGGTTGTTGTTTTAAGAGCGTACGGTTTCCTAACTGTGTTTCTTTTTTTGTTCTCAGAGGA AGAAGAAGAAGCTGTTCTGTTATTGACACTTAGCCTGGAGAGTTGA
AA sequence Show only first row Show all	>Lus10026356 pacid=23156472 polypeptide=Lus10026356 locus=Lus10026356.g ID=Lus10026356.BGIv1.0 annot-version=v1.0 MSGPLDRFARPCFEGFSGGDESREERRERRERKSDFENSEDERRTRIGSLKKKALNASTKFKHSLKKKSSRRKSADGRISSVSIEDVRDLEEMQAVDAFR QSLIMDELLPERHDDYYMMLRFLKARKFDSEKAKHMWADMIQWRKEFGTDTITEEFEFPELNEVLKYYPNLYHGVDKEGRPVYMERLGKVDPHKLMQVTD MDRYVKYHVREFEKSFLVKFPACSIAAKRHIDSSTTILDVQGVGLKNFTKSARELVMRLQKIDGDNYPETLHEMYIINAGAGFRLLWNTIKSFLDPRTTS KIHVIGNKYQSKLLEVIDASELPEFMGGSCTCADQGGCLRSDKGPWRNQDILKMVLDGGARRARQVVKILNNEGKVITYAKPPYYPMVKGSDSSAAESGS EAEDIASPKALKAYSQLRLTPVREEAKIMGKANHPSSFPGFDEYIPIVDKAVDSTWSEQTVLKKLEISKAKEVISTSIASTVPEAPKTSEAIHTRIWLAV LALFITILNLVRSLPSRMSKTNSVVVPNHNGASAGGFVVESAEELNRPPSPAPGYTDADLLTCVLKRLSEVEEKVDTLQAKPLKMPYEKEELLNAAVCRV DGLEAELIATKKALHEALMRQEELLAYIDSQEDAKYRVSISEDDDDLVVVLRAYGFLTVFLFLFSEEEEEAVLLLTLSLES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21520			Sec14p-like phosphatidylinosit...		Lus10026356 [exp]	0	1
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10008285 [exp]	1.0	0.9512
AT2G36960	MYB	TKI1	TSL-kinase interacting protein...		Lus10013816 [exp]	2.2	0.9255
AT1G32230		ATP8, CEO1, RCD...	RADICAL-INDUCED CELL DEATH1, A...		Lus10030991 [exp]	3.2	0.9378
AT5G54730		ATATG18F	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10035835 [exp]	4.9	0.9338
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10033251 [exp]	8.8	0.9209
AT1G05410			Protein of unknown function (D...		Lus10041201 [exp]	9.6	0.9264
AT5G62570			Calmodulin binding protein-lik...		Lus10043463 [exp]	11.8	0.9158
AT1G09060			Zinc finger, RING-type;Transcr...		Lus10017092 [exp]	12.3	0.9200
AT3G11440	MYB	AtMYB65	myb domain protein 65 (.1)		Lus10026142 [exp]	12.5	0.9162
AT5G06830			unknown protein		Lus10012023 [exp]	13.4	0.8960

Compare expression of checked genes

Lus10026356 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.