Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042300 [exp] 480 / 6e-170 ND 35 / 0.008 Lus10028788 [exp] 179 / 2e-52 ND / Lus10042299 [exp] 168 / 2e-50 ND / Lus10007012 [exp] 115 / 6e-29 ND / Lus10007009 [exp] 104 / 1e-24 ND / Lus10006666 [exp] 59 / 1e-09 ND / Lus10017966 [exp] 50 / 1e-07 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G114701 [exp] 96 / 1e-22 ND / Potri.009G114800 [exp] 81 / 2e-17 ND / Potri.004G153200 [exp] 40 / 0.0002 AT1G49310 48 / 2e-08 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10950 [flax] [poplar] Organ_specific Organ specific protein
Representative CDS sequence Show only first row Show all	>Lus10026358 pacid=23156511 polypeptide=Lus10026358 locus=Lus10026358.g ID=Lus10026358.BGIv1.0 annot-version=v1.0 ATGGCTTCTCAGTTGGCTGCTTTCTTAACTACTCTCGTCCTACTCTTCCTGGTAGCTGGCAACTTCAGCAATGCGAGGAAAGACCGAGCAGGAGAGTACT GGAGAGCCATGATGAAGGATCAGCCGTTGCCTGAAGCTATCAAATCTCTGATAGTAGTCGAGGAGCCCACCGTACTGTCATCGAACTCCGACCACACCGG AGTTCATTGTGATGCTGAGGAGGCAGGGGATAATGACCACAAATCTGTCCGTACTAAAGGCCATGAGATGAAATTCACAAGAGATGTCCTGCCACAGCCT CAAATCTCTAACTATGATGGTGATGATGCTACATTCAAAAAGTTGATGAAGGATATCGAGTCGCAACCTCAAATCTCTAGCTACGGAGCTACTCGTGCAT CTAGTAAATTTGTGAGAGATGTCATGCCACAACCTCAACTTTCGAGCTATGATGACAACGGTGTCGAGCGGAGCAAGGTTGAACAAGGTGTCAGGCATCA ACTGAGGGGTACTGATACAGGGAGATTCGTTGGAGTTGTCGAGTCACAACCTCAAATCTCTAATTATGGTGATGATGCTATATCAATTAAGTTTGCGGAG GACGTAAAGTCGCAACCTCAGATCTCGAGCTATGATGGTGATGCTACATCAAAGAAGTTCGTGAAGGACTTCAAGTCGCAGCCTCAAATCTCTAGGTACG GACCTGAGCACAAATTCATGAAGGACATCATGCCGCAACCTCAAATTTCGAGCTACGATGACAACGGTATCAAGCTAAGCAAGGTTGAAGAAGGTAGATT CGTTAGAGACATCGAGTCACAACCTCAAATCTCCAACTATGATGGCGATGCTATGTCAAATAAATTTGTTAAGGACATCGAGCCGCAACCTCAAATCTCG AGCTATGGAACCCCGCACAAATTCACAAAGGACATCATGCCACAACCTCAAATTTCGAGCTACGATGAGAAGGGTGTCGAGCGGAGCAAGGTCGAAGAAG GTACTGGAAAATTCGTTAGAGACCTCGAGTCACAGCCTCAAATCTCCAACTACGACGACAATAATACCGCCCCGAATAAGTTTGCAAAGGATTTGAGGTC GGAACCTCAAATCTCCAACTACGACGACAATAATACCGCCCCGAATAAGTTTGCAAAGGATTTGAGGTCGCAACCTCAAATCTCTAACTATGGAGAAAAG ATGGGAAACAAATTCACGAAGGACATCATGCCACAACCTCAGATTTCAAGCTATGACGAGAATGGCGTTGTAGGAAGCAAGAAAGATGATCTCGCCCAAG AACTAGTCAAGGTTGTGGAGCAGATAGCCATGGTTGTAGTGTAA
AA sequence Show only first row Show all	>Lus10026358 pacid=23156511 polypeptide=Lus10026358 locus=Lus10026358.g ID=Lus10026358.BGIv1.0 annot-version=v1.0 MASQLAAFLTTLVLLFLVAGNFSNARKDRAGEYWRAMMKDQPLPEAIKSLIVVEEPTVLSSNSDHTGVHCDAEEAGDNDHKSVRTKGHEMKFTRDVLPQP QISNYDGDDATFKKLMKDIESQPQISSYGATRASSKFVRDVMPQPQLSSYDDNGVERSKVEQGVRHQLRGTDTGRFVGVVESQPQISNYGDDAISIKFAE DVKSQPQISSYDGDATSKKFVKDFKSQPQISRYGPEHKFMKDIMPQPQISSYDDNGIKLSKVEEGRFVRDIESQPQISNYDGDAMSNKFVKDIEPQPQIS SYGTPHKFTKDIMPQPQISSYDEKGVERSKVEEGTGKFVRDLESQPQISNYDDNNTAPNKFAKDLRSEPQISNYDDNNTAPNKFAKDLRSQPQISNYGEK MGNKFTKDIMPQPQISSYDENGVVGSKKDDLAQELVKVVEQIAMVVV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10026358 [exp]	0	1
AT2G19800		MIOX2	myo-inositol oxygenase 2 (.1)		Lus10006198 [exp]	3.6	0.7377
AT5G48600		ATSMC4, SMC4, A...	ARABIDOPSIS THALIANA STRUCTURA...		Lus10030681 [exp]	17.5	0.6512
AT4G34760			SAUR-like auxin-responsive pro...		Lus10026296 [exp]	18.4	0.6683
AT3G53010			Domain of unknown function (DU...		Lus10042635 [exp]	32.6	0.6506
AT4G18050		ABCB9, PGP9	ATP-binding cassette B9, P-gly...		Lus10004583 [exp]	34.1	0.6670
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Lus10027617 [exp]	35.9	0.6596
AT5G61990			Pentatricopeptide repeat (PPR)...		Lus10016725 [exp]	53.1	0.6126
AT1G52780			Protein of unknown function (D...		Lus10033064 [exp]	53.7	0.6274
AT1G06520		ATGPAT1, GPAT1	glycerol-3-phosphate acyltrans...		Lus10010934 [exp]	53.9	0.6062
AT2G06090			Plant self-incompatibility pro...		Lus10016350 [exp]	56.5	0.6403

Compare expression of checked genes

Lus10026358 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.