Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19180 704 / 0 ATCDP1, ARC6H, PARC6 A. THALIANA CHLOROPLAST DIVISION SITE POSITIONING 1, paralog of ARC6 (.1.2) AT5G42480 88 / 1e-17 ARC6 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, Chaperone DnaJ-domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042298 [exp] 1165 / 0 AT3G19180 635 / 0.0 A. THALIANA CHLOROPLAST DIVISION SITE POSITIONING 1, paralog of ARC6 (.1.2) Lus10033922 [exp] 108 / 6e-24 AT5G42480 827 / 0.0 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, Chaperone DnaJ-domain superfamily protein (.1) Lus10024309 [exp] 92 / 6e-19 AT5G42480 814 / 0.0 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, Chaperone DnaJ-domain superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G035900 [exp] 851 / 0 AT3G19180 843 / 0.0 A. THALIANA CHLOROPLAST DIVISION SITE POSITIONING 1, paralog of ARC6 (.1.2) Potri.015G028101 [exp] 840 / 0 AT3G19180 857 / 0.0 A. THALIANA CHLOROPLAST DIVISION SITE POSITIONING 1, paralog of ARC6 (.1.2) Potri.012G036100 [exp] 329 / 2e-107 AT3G19180 297 / 4e-96 A. THALIANA CHLOROPLAST DIVISION SITE POSITIONING 1, paralog of ARC6 (.1.2) Potri.005G235000 [exp] 92 / 9e-19 AT5G42480 884 / 0.0 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, Chaperone DnaJ-domain superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026359 pacid=23156377 polypeptide=Lus10026359 locus=Lus10026359.g ID=Lus10026359.BGIv1.0 annot-version=v1.0 ATGGCAGTTCCACACTTCAATCTGACGCCAATTCTTCCTTCCTCCTCTTCTTCTTCTTGCTACTGCTGTCGCTGTCAACATTTCCGCCTTCTCCGGCGCA ATGCCCGTCCTACGCATAAACCTCTCGTCGATTTCGCCCCCCATCCGATCATCTCCACTCCTGCTTCCGTTTCTAGGGTTCTGAGAAGGAGAGCTTTGTA CCAATGGATCCTCAACGCCGCTGCCACTACTCCCGTCATCGACAATGCCGCCGTTTGCTCCGCCGCTTCTATGGAAATTCCGGTCACCTGCTATCAGCTG CTTGGCCTAAGCGATCAAGCCGAGAAAGACGAGGTAGCTAAATCGGTGAACCAATTGAAAGGTGCAGAGATAGAGGAAGGATATACAACAAGTGTCAAGA AGTGTCGCGAGGATCTTCTGGCGGATGTGAGGGCTAAACTTCTTTTCGAAGACGAATATGCTGGAAATGTACGGGAGAAGATCCGTCCAAAGTCTTCTCT TTACATTCCATGGGCGTGGCTACCTGGTGCTCTTTGCCTTCTTCAAGAGGTTGGCGAAGAGAAGTTAGTACTTGAAATTGGCACAATGGTGATCAAGAAA CCGGATTCTAAGCCATATATCCATGACATACTTCTCTCAATGGCAACGGCAGAATGTGCGATCGCAAAGATCGGGTTTGAGAACAATAAAGTGTCCCTTG GATTTGAAGCGCTTGCTCGTGCTCAGTGTCTACTTAGGAGTAAGACGTCTCTTGGGAAGATGGGTTTGCTGGCTAAGATAGAAGAATCCTTGGAGGAGCT TGCGCCTGCTTGCACACTGGAGATATTAGGTATGCCTCATTCTCCTGAAAATGCTGAAAGGAGACGAGGAGCAATAGCGGCATTGCGTGAGTTACTCAGA CAGGGCCTTGATGTGGAAGTATCATGTAGAGTCCAAGGCTGGCCGTGCTTCTTAAGTCAAGCTCTTCACCGGCTCAGGGCCACAGAAATAGTTGATCTTT GTCCTTGGGATGAGTTAGCCCTTACTCGGAAAAACAAAAAATCAGTTGAATCACATACCCAAAGGGCTGTAATTGACTTCAGCTGTTTCTATGTGGCACT GATAGCTCATATTGCTCTAGGTTTCTCTAGCAAGCAGACAAAATTGATTAATAAAGCAAAAGATATATGTGGCGCTTTGATGGCATCAGAAGGTATTGAT CTAAAGTTGGAGGAGGCATTATGCTTATTTCTTTTGGGCGAGGGTAATGAGGCGCTGGTGGTCGAAAAGCTTCAACAAGTAGAATTGAATGCAAATCCTG CTCCGTGGAGTTTAGCTTTGGGGAAGGAAAAGAATGCTGCAAAGACTGTGAAGTTGTCTCTAGAAACATGGCTTAAGGACTCCGTGCTTGCTGCATTTTC AGATACCAGAGATTGTTCACCATCACTGGTCAACTTTTTCTCTGGTCAAAAGAGAACTGAAAGCGATCGAAGTAAAGTACAGTATCACAAGTCCTCCAAA CGTGCTGTTGCTCAAAGGCCATTTTCTGATTTCACATCAGAAAGAATGGACATTGGGGAAACTCTCGCATTCCAGAGCTCTTCCCCACATCTTGGATCTG CTGTTAAGCAACTGGCTTTCACCGATTTCCAGACCTCATTTATGTCTGAAAATAAAGATGGAGTAATCAATGAGGATCAACCGACTGTTCAGCTGAAACG AAACTTGGACATGGGCAACGATGGATCTTGGGGAAGTTGGCCATCTTATAACACTCTGGCTGGGAAGATCGTTTTTGTTTGTGTACTGGGTTGCATTGTT TATATAACCTCAAAACTATCAATCAGGAGTCTAAGAGGATCAACTCCGAATGTTGCCTTCAATCAGCAAATTGCTGATAGCTCGTTATCTGGAGAATGTG GCAGCATTAGTAACAGAATGAAGAAGCTGTCAGCAACAGTTAAAACACAATTCTACAAGTTGCCGCAGACTAGGACATCATCAGAGAACTCATTATCTTC TGATAGAGCATTATCTAGGAAGCAGATGCCATTTGAAGACGCTGAAGTGCTGGTTAGACAATGGCAAGCTGTTAAAGCTGAATCACTGGGCCCTGGACAT CAAACCCAGAGCCTTACTGAACTGCTTGCTGAATCAATGCTTGATCAGTTTCAAGCTTTGGCTGATGCAGCTCAATCCAAATCCTGCTATTGGAGGTTCG TTCTGCTCGACCTGTCCATCCTGAAAGCTGACATTGTCTCTGATGGATTCGGCATGGAAAGGGCTGAAATTGAAGCTCTCCTGGAGGAAGTAGCGGAGCT TGTTGATGAATCAGAGCAAAAGAATCCAAACTATCACAGCAAGTATAAGATTCATTATGTGCTGAAAAGGCAAGAAGATGGATCGTGGCGGTTCTGCAAA GGGGATATACAATCACCGTCGTGA
AA sequence Show only first row Show all	>Lus10026359 pacid=23156377 polypeptide=Lus10026359 locus=Lus10026359.g ID=Lus10026359.BGIv1.0 annot-version=v1.0 MAVPHFNLTPILPSSSSSSCYCCRCQHFRLLRRNARPTHKPLVDFAPHPIISTPASVSRVLRRRALYQWILNAAATTPVIDNAAVCSAASMEIPVTCYQL LGLSDQAEKDEVAKSVNQLKGAEIEEGYTTSVKKCREDLLADVRAKLLFEDEYAGNVREKIRPKSSLYIPWAWLPGALCLLQEVGEEKLVLEIGTMVIKK PDSKPYIHDILLSMATAECAIAKIGFENNKVSLGFEALARAQCLLRSKTSLGKMGLLAKIEESLEELAPACTLEILGMPHSPENAERRRGAIAALRELLR QGLDVEVSCRVQGWPCFLSQALHRLRATEIVDLCPWDELALTRKNKKSVESHTQRAVIDFSCFYVALIAHIALGFSSKQTKLINKAKDICGALMASEGID LKLEEALCLFLLGEGNEALVVEKLQQVELNANPAPWSLALGKEKNAAKTVKLSLETWLKDSVLAAFSDTRDCSPSLVNFFSGQKRTESDRSKVQYHKSSK RAVAQRPFSDFTSERMDIGETLAFQSSSPHLGSAVKQLAFTDFQTSFMSENKDGVINEDQPTVQLKRNLDMGNDGSWGSWPSYNTLAGKIVFVCVLGCIV YITSKLSIRSLRGSTPNVAFNQQIADSSLSGECGSISNRMKKLSATVKTQFYKLPQTRTSSENSLSSDRALSRKQMPFEDAEVLVRQWQAVKAESLGPGH QTQSLTELLAESMLDQFQALADAAQSKSCYWRFVLLDLSILKADIVSDGFGMERAEIEALLEEVAELVDESEQKNPNYHSKYKIHYVLKRQEDGSWRFCK GDIQSPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19180		ATCDP1, ARC6H, ...	A. THALIANA CHLOROPLAST DIVISI...		Lus10026359 [exp]	0	1
AT4G18820			AAA-type ATPase family protein...		Lus10015234 [exp]	1.4	0.9071
AT3G19960		ATM1, ATATM	myosin 1 (.1.2)		Lus10040996 [exp]	1.4	0.9236
AT3G19960		ATM1, ATATM	myosin 1 (.1.2)		Lus10013443 [exp]	4.9	0.8989
AT2G34780		EMB1611, MEE22	EMBRYO DEFECTIVE 1611, materna...		Lus10038447 [exp]	16.9	0.8834
AT5G15510			TPX2 (targeting protein for Xk...		Lus10030650 [exp]	17.9	0.9031
AT5G27000		KATD, ATK4	KINESIN-LIKE PROTEIN IN ARABID...		Lus10018049 [exp]	25.8	0.8893
AT4G21820			binding;calmodulin binding (.1...		Lus10007665 [exp]	29.8	0.8926
AT5G26850			Uncharacterized protein (.1.2....		Lus10020697 [exp]	29.8	0.8896
AT1G49980			DNA/RNA polymerases superfamil...		Lus10020986 [exp]	29.8	0.8311
AT2G38720		MAP65-5	microtubule-associated protein...		Lus10041635 [exp]	30.0	0.8859

Compare expression of checked genes

Lus10026359 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.