Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73450 679 / 0 Protein kinase superfamily protein (.1) AT1G73460 679 / 0 Protein kinase superfamily protein (.1) AT3G17750 669 / 0 Protein kinase superfamily protein (.1) AT2G40120 508 / 1e-168 Protein kinase superfamily protein (.1) AT4G03175 185 / 3e-54 Protein kinase superfamily protein (.1) AT5G35980 193 / 7e-51 YAK1 yeast YAK1-related gene 1 (.1.2) AT4G24740 172 / 4e-46 AME1, AFC2 FUS3-complementing gene 2 (.1.2) AT1G13350 176 / 2e-45 Protein kinase superfamily protein (.1.2) AT3G53640 168 / 3e-43 Protein kinase superfamily protein (.1) AT4G32660 162 / 3e-43 AME3 Protein kinase superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042297 [exp] 1303 / 0 AT1G73450 1335 / 0.0 Protein kinase superfamily protein (.1) Lus10031329 [exp] 950 / 0 AT1G73460 645 / 0.0 Protein kinase superfamily protein (.1) Lus10031902 [exp] 944 / 0 AT1G73450 1318 / 0.0 Protein kinase superfamily protein (.1) Lus10028283 [exp] 511 / 7e-169 AT2G40120 587 / 0.0 Protein kinase superfamily protein (.1) Lus10040203 [exp] 502 / 2e-163 AT2G40120 590 / 0.0 Protein kinase superfamily protein (.1) Lus10031328 [exp] 425 / 4e-142 AT1G73450 405 / 6e-135 Protein kinase superfamily protein (.1) Lus10020366 [exp] 198 / 8e-52 AT5G35980 1159 / 0.0 yeast YAK1-related gene 1 (.1.2) Lus10009542 [exp] 198 / 1e-51 AT5G35980 1147 / 0.0 yeast YAK1-related gene 1 (.1.2) Lus10036878 [exp] 167 / 2e-44 AT4G24740 662 / 0.0 FUS3-complementing gene 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G039700 [exp] 855 / 0 AT1G73460 1343 / 0.0 Protein kinase superfamily protein (.1) Potri.015G033400 [exp] 837 / 0 AT1G73460 1356 / 0.0 Protein kinase superfamily protein (.1) Potri.008G069000 [exp] 523 / 3e-172 AT2G40120 607 / 0.0 Protein kinase superfamily protein (.1) Potri.010G188400 [exp] 522 / 4e-172 AT2G40120 576 / 0.0 Protein kinase superfamily protein (.1) Potri.013G075300 [exp] 209 / 1e-55 AT5G35980 1134 / 0.0 yeast YAK1-related gene 1 (.1.2) Potri.019G043400 [exp] 197 / 2e-51 AT5G35980 1088 / 0.0 yeast YAK1-related gene 1 (.1.2) Potri.006G244400 [exp] 171 / 5e-46 AT4G32660 634 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.010G126900 [exp] 173 / 6e-44 AT3G25840 727 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G119100 [exp] 172 / 2e-43 AT3G25840 689 / 0.0 Protein kinase superfamily protein (.1.2) Potri.015G085700 [exp] 164 / 2e-43 AT4G24740 747 / 0.0 FUS3-complementing gene 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10026360 pacid=23156492 polypeptide=Lus10026360 locus=Lus10026360.g ID=Lus10026360.BGIv1.0 annot-version=v1.0 ATGGCGGACACAAATTCGGTTGACGTGATCCTTGACTTCTTGCGGAGAAACCGGTTCACTAGAGCTGAGGCAGCGTTAAGGAGTGAGCTTGGCGTTCAAC CTGATCTGAATGGGTTCTTGCAGAAACTCAGTCTTGATGACAAGGCAACGAGGGAAGTCGTAGAAGAAAGGAATGGGAGCAACAAACCAGCTGCTAAATT TCAGGGCTCTGGTTCCCGAGATAGTTGTGAGGATTCTAAAGAACTTATAGTGAAAGAGATAGACTGCAGCACTCACGGAAATGGGTCTGAGGGTAGATGG AAAAGTTCTGCTTCTGCTGACGACCGTAATGTCAAACCTAATGAAACAATCGATGGCACAGACTCTGGGGATACCGTCTTAGATTTGTATTCGTGGAAGT CCATAGCTAACAACGGTCCTAGTGCTTATCAGAATGATAGAGCTAATACAAGCAACTACTCTGGTAGAACAGAAGGGAAATCTAGAGAGGAGGCTACCTT CTCAGGTGTAAAGAAAACTGCATGGCAGGAAAGCAGCAGTGGTTCATCCATCCCTGATTCTAGAAATAGCAAAATTCAGACAAGTGATCCGATAGAGTTT GGTCAGCAAGTTAAAACAACTGTCTCTTATCCTGCTGACAACCCATGGTCAGTAACTGAGCAGCCAACAAGTTCTTCTGCGGACATATGGAAAAATTGTT CTGTGAAGACTGTTCTTCCGTTCTCCATTCTGGATGGATCTACTAGTTATGACACGTCATCAGATAAGAAGGAAGGGAATAAGAAAGCAGACGTGCCTGA TGTAAGGGCTGCCATTAAAGAAAAGGTAGATGAAGTTGGCAGAGCTTTGTACTTTGGGAACTCACAAGGGAGTATTGAACCGAAGAATTTAAGCTCTTCA GGGTTTACTATTGCGGCTGAGAATCATAAAGAAGACTATCCGAGACTTCCGCCCGTTAGACTGAAGTCAGAAGACAAATTATTGAATGTCAATTGGCAGG AGAAGTTTGAGCGTGATAAGCAAGGGGCAAAGCTTAGCAGTGGTGATAGTTCCTTTCTGATAGGGTCATATCTTGACGTTCCTATTGGGCAGGAAATCAA CTCTTCAGTTGACGATTCAGCTGGAAAAAGAATTGCCGGAGGTAGCTGGCTGTCCGTGAGTCAGGGAATTGCAGAGGACGACCTAGTTTCTGGTTTTGCT ACAGTTGGTGATGGATTGAGTGAGTCTATTGACTATCCGAATCAATATTGGGATTCTGATGAATATGATGATGATGAGGATGTCGGGTACATGAGGCAAC CTATAGAGGATGAGGCCTGGTTTCTGGCTCATGAAATTGATTATCCTAGTGACAACGAGAAGGGGACAGTAACTGGGAGCGTTCCAGACCCTCAGGAAAG GGGTCCAACAAAAGACGAGGATGATGATCAATCTTTTGCTGAGGAAGACTCGTACTTTTCTGGGGAGCGGTATTTTCAAACAAAAAATGTTGAACCTGCT ACAGCTTCAGATGATCCTAGTGGACTGTCAGTGACTGAAATTTATGGGAGAACACATGATAATGACTTGATGGCACAGTATGATGGTCAATTGTTAGATG AAGAAGAACTAAATTTGATGTGTGGTGAACCTGTGTGGCAGGGGTTTGTCACGCAAACAAATGAACTAGTCATGCTAGGAGACGGGAAAGTAATCAATGA CTCCGGGAGGACACGAATGGATGATGTTGGTATGGATGATGATCAACATGGCTCGGTTCGATCAATTGGTGTGGGTATTAACAGCGATGCTGCTGATTTT GGGAGTGAAATACGTGATAGTTTGATTGGTGGTAGCAGTGAAGGAGATCTGGAATACTTTCGTGATCATGATGTCGAGGTTAGAGGGTATAGAGCTAGTC ACCAAGATTTAGACAAGAAATATGGTGATAAACAAAGCAAGGATAAAAAAAGGGCCAGCAAAGATGATGCAGGGAATTTTGGGAATGAAAAAGTTGCTTC TACTCAACTGAAAGCTCTTAAAGATGGAGGGTTTTCATTTCCTCCACCATTGAGGGATAGTCAAGAGGTCCAGGCAGGGTCTAGCAAGTCTTTGCAACTC CCTCTACGCTTTCAAACTATGCATACACCGAAAAAGAACGTGCCAAGAAAGAGGAGGATGATAAGATTGACGATGCTGGGGAAGAACCTGGGATGTCTCT TGATGACGAAGAAGCAATTGCTGTGCAAGAACAAGACTGGCTTTGAGGAGGATAAGAACTTCCATGTTGTGTTAAATTCCGTGTTAGCTGGGCGATATCA TGTTACAGAGTATCTTGGCTCAGCTGCTTTCAGTAAAGCCATTCAGGCGCATGATCTGCACACAGGCATGGATGTCTGTGTGAAAATCATCAAAAACAAC AAGGACTTCTTTGACCAGAGCCTTGATGAGATAAAACTTCTCAAATACGTGAACAAGCATGATCCAGCTGACAAGTATCACCTTCTCAGATTATACGACT ATTTCTACTACCGGGAACATTTGTTGATTGTGTGTGAACTTCTCAAAGCAAACTTATATGAATTCCATAAGTTCAACAGAGAATCTGGAGGAGAAGTATA TTTCACAATGCCCAGATTGCAGTCAATTACAATTCAGTGTTTGGAAGCACTTCAATTCTTGCATGGTCTCGGCCTCATTCACTGCGATTTGAAGCCTGAG AATATACTAGTGAAAAGCTACAGTCGGTGCGAGGTGAAAGTCATCGATCTCGGAAGTAGCTGCTTCGAGACGGATCACCTCTGCTCTTACGTCCAATCTA GATCATATCGGGCACCTGAGGTCATCCTCGGCCTTCCATATGATAAGAAGATCGACGTTTGGTCACTCGGCTGTATCTTGGCAGAGCTTTGTACTGGCAA TGTCCTCTTCCAAAATGATTCACCAGCAACCCTTCTGGCCAGAGTCATCGGAATCATCGGGGCCATTGAACAGGAAATGTTGGCTAAAGGGCGAGACACA TACAAGTATTTCACCAAAAATCACATGCTTTACGAACGGAATCAGGAGACAAACCGGCTAGAGTATTTGGTACCGAAGAAGACATCATTGAGGCACCGGT TGCCGATGGGGGACCATGGATTCATTGATTTCGTCAGGCATTTGCTCGAAGTGAACCCCAACAAGCGGCCTTCTGCGTCAGAGGCTCTGAAGCACCCTTG GCTATCCTTCCCTTACGAACCCATATCTGCGTAA
AA sequence Show only first row Show all	>Lus10026360 pacid=23156492 polypeptide=Lus10026360 locus=Lus10026360.g ID=Lus10026360.BGIv1.0 annot-version=v1.0 MADTNSVDVILDFLRRNRFTRAEAALRSELGVQPDLNGFLQKLSLDDKATREVVEERNGSNKPAAKFQGSGSRDSCEDSKELIVKEIDCSTHGNGSEGRW KSSASADDRNVKPNETIDGTDSGDTVLDLYSWKSIANNGPSAYQNDRANTSNYSGRTEGKSREEATFSGVKKTAWQESSSGSSIPDSRNSKIQTSDPIEF GQQVKTTVSYPADNPWSVTEQPTSSSADIWKNCSVKTVLPFSILDGSTSYDTSSDKKEGNKKADVPDVRAAIKEKVDEVGRALYFGNSQGSIEPKNLSSS GFTIAAENHKEDYPRLPPVRLKSEDKLLNVNWQEKFERDKQGAKLSSGDSSFLIGSYLDVPIGQEINSSVDDSAGKRIAGGSWLSVSQGIAEDDLVSGFA TVGDGLSESIDYPNQYWDSDEYDDDEDVGYMRQPIEDEAWFLAHEIDYPSDNEKGTVTGSVPDPQERGPTKDEDDDQSFAEEDSYFSGERYFQTKNVEPA TASDDPSGLSVTEIYGRTHDNDLMAQYDGQLLDEEELNLMCGEPVWQGFVTQTNELVMLGDGKVINDSGRTRMDDVGMDDDQHGSVRSIGVGINSDAADF GSEIRDSLIGGSSEGDLEYFRDHDVEVRGYRASHQDLDKKYGDKQSKDKKRASKDDAGNFGNEKVASTQLKALKDGGFSFPPPLRDSQEVQAGSSKSLQL PLRFQTMHTPKKNVPRKRRMIRLTMLGKNLGCLLMTKKQLLCKNKTGFEEDKNFHVVLNSVLAGRYHVTEYLGSAAFSKAIQAHDLHTGMDVCVKIIKNN KDFFDQSLDEIKLLKYVNKHDPADKYHLLRLYDYFYYREHLLIVCELLKANLYEFHKFNRESGGEVYFTMPRLQSITIQCLEALQFLHGLGLIHCDLKPE NILVKSYSRCEVKVIDLGSSCFETDHLCSYVQSRSYRAPEVILGLPYDKKIDVWSLGCILAELCTGNVLFQNDSPATLLARVIGIIGAIEQEMLAKGRDT YKYFTKNHMLYERNQETNRLEYLVPKKTSLRHRLPMGDHGFIDFVRHLLEVNPNKRPSASEALKHPWLSFPYEPISA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73460			Protein kinase superfamily pro...		Lus10026360 [exp]	0	1
AT5G18230			transcription regulator NOT2/N...		Lus10002632 [exp]	2.8	0.9060
AT5G36740			Acyl-CoA N-acyltransferase wit...		Lus10022053 [exp]	5.9	0.8843
AT5G40200		DEGP9	DegP protease 9 (.1)		Lus10014524 [exp]	6.9	0.9014
AT1G79280		AtTPR, NUA	TRANSLOCATED PROMOTER REGION, ...		Lus10030142 [exp]	7.2	0.8917
AT2G46520			cellular apoptosis susceptibil...		Lus10030241 [exp]	8.5	0.8940
AT2G21050		LAX2	like AUXIN RESISTANT 2 (.1)		Lus10025057 [exp]	9.8	0.8719
AT1G01950		AtKINUb, ARK2	Arabidopsis thaliana KINESIN U...		Lus10038007 [exp]	9.9	0.8779
AT1G61010		CPSF73-I	cleavage and polyadenylation s...		Lus10001371 [exp]	13.9	0.8788
AT3G60240		CUM2, EIF4G	CUCUMOVIRUS MULTIPLICATION 2, ...		Lus10028156 [exp]	16.5	0.8807
AT3G56370			Leucine-rich repeat protein ki...		Lus10030526 [exp]	18.4	0.8682

Compare expression of checked genes

Lus10026360 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.