Plant FIBer expression Database

Lus10026361 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G22110 715 / 0 DPB2, CYL2, DBP2, ATDPB2 CYCLOPS 2, DNA polymerase epsilon subunit B2 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042296
[exp]
943 / 0 AT5G22110 662 / 0.0 CYCLOPS 2, DNA polymerase epsilon subunit B2 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G039300
[exp]
853 / 0 AT5G22110 743 / 0.0 CYCLOPS 2, DNA polymerase epsilon subunit B2 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0163 Calcineurin PF04042 DNA_pol_E_B DNA polymerase alpha/epsilon subunit B
CL0671 AAA_lid PF12213 Dpoe2NT DNA polymerases epsilon N terminal
Representative CDS sequence
>Lus10026361 pacid=23156603 polypeptide=Lus10026361 locus=Lus10026361.g ID=Lus10026361.BGIv1.0 annot-version=v1.0
ATGAGCAGCAGCGGCGGTGTCGGAAACTCCCTGAGGAAGTCCATACAGAAGAAGTTCAAGATCAGAGGCTACGCTTTGAAAGTCGACGCTCTCGAAGAGA
TCCTCTCCTTCGTCAATCGATACCAAGACGCCGAAGACGAGGCCCTCGACCTTCTCCTCGATCACCTCCTGTCCGAACCTCGGAAATTGGGAGTGAAGTC
TTCGATTATTGAGAAGGAGCTTGTGAGTCGTGCCGTAAGCTCGTTACTGGAAGCTGACGAAGCTGTGGAGGAAAACCCTAACTCGGTCTCGCCGCAGTCT
GCACTTCGCGTTATTGATTCATTTTCAATCCCTAAATATCGGTATCATTCGATAAAGAAGCAATTCTATCAGCATGCGGGGCGGCTTCCTATCCAAGGTG
ACGCTTCAGCTAAAGCAGCTCTATACAGGGACAGGTTTCTTCTGCTTTTGCAGAGAGTGCAACGCGATCAGCACTTCTCCAAGCCTGCATTTGAATCTGA
TATTTCACACTATGGAAGTTGTGAGATAGCACCAATTCAGTCTCTTATTGGGAAGACAGGTACAAAATGGGTTATGGGTCTCATCTCCCAATTGGAGGAT
GGCCATTTTTTCTTGGAGGATCTTACTGCTTCAGTCGAGATCGATTTCTCAAAAGCAATATCCTTCAAGCTTTCCTTAATAATGGAACACAAAATAACTA
CTGGATTCCTATCAGAGAACACCATAGTTGTTGCAGAAGGAGAAATGCTCGTGGATGGTATTTTCCAGGTACATACATGTGGATTTCCTCCCCTGGAGGA
TAGAGAGAAGTCACTAAAAGCACTCGGTGGACATGATTTCTTTGGTGGTGGTACACTGGCAAAAGAAGAAGCTCTCAGGTTTGTGGATCTGGAGAAAAGA
GCGGTTAATGACATGTTTGTTGTACTATACGACATTTGGCTAGATGATGAAGAGGTCATGAAGAAGTTGGAGACTGTGCTTGATGGTTTCGAGAGTCAAG
AGGTGGTTCCTTCTTTGTTTGTCTTTATGGGGAACTTCTGTTCACTCCCATGTAACCTTTCCTTCCATTCAATGAAGAGTCTCAGGGTGCAATTTGGGAA
GTTAGGCCAGATGATTAGTGCTCATCCACGGTTAAAGGATCAGAGTCGTTTCCTATTCATCCCCGGCCCTGACGATGCAGGCCCATCAACTGCTCTACCA
AGATGCCCTTTGCCAAACTACTTGACTGAGGAGCTGCAGAACCACGTTCCTAGTGCTATATTTTCAACCAACCCATGCCGAATCAAGTTCTACACCCAAG
AAATTGTGTTCTTCTGTCAGGATCTTCTATATAGGATGCGCCGTTCGTGCTTGATACCGCCTTCTACAGAAGAGACTGACGATGACTTCGAGCATTTGGT
TGCCACAATCACCCATCAAAGTCATCTCTGCCCTCTCCCTCTCATTGTCCAGCCAGTAATTTGGAACTATGATCACAGTCTTCATCTTTATCCATCTCCA
CATACGATAGTATTAGGTGACAACAGTGAGCAGAAGGCATTCAAATATACCGGCATCACTTGTTTCAACCCAGGGTCTTTCTCGAGTGACAGTACTTTCG
TAGCGTATCGTCCTTGCACCCAAGAGGTTGAGCTCTCAGCATTGTGA
AA sequence
>Lus10026361 pacid=23156603 polypeptide=Lus10026361 locus=Lus10026361.g ID=Lus10026361.BGIv1.0 annot-version=v1.0
MSSSGGVGNSLRKSIQKKFKIRGYALKVDALEEILSFVNRYQDAEDEALDLLLDHLLSEPRKLGVKSSIIEKELVSRAVSSLLEADEAVEENPNSVSPQS
ALRVIDSFSIPKYRYHSIKKQFYQHAGRLPIQGDASAKAALYRDRFLLLLQRVQRDQHFSKPAFESDISHYGSCEIAPIQSLIGKTGTKWVMGLISQLED
GHFFLEDLTASVEIDFSKAISFKLSLIMEHKITTGFLSENTIVVAEGEMLVDGIFQVHTCGFPPLEDREKSLKALGGHDFFGGGTLAKEEALRFVDLEKR
AVNDMFVVLYDIWLDDEEVMKKLETVLDGFESQEVVPSLFVFMGNFCSLPCNLSFHSMKSLRVQFGKLGQMISAHPRLKDQSRFLFIPGPDDAGPSTALP
RCPLPNYLTEELQNHVPSAIFSTNPCRIKFYTQEIVFFCQDLLYRMRRSCLIPPSTEETDDDFEHLVATITHQSHLCPLPLIVQPVIWNYDHSLHLYPSP
HTIVLGDNSEQKAFKYTGITCFNPGSFSSDSTFVAYRPCTQEVELSAL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G22110 DPB2, CYL2, DBP... CYCLOPS 2, DNA polymerase epsi... Lus10026361
[exp]
0 1
AT5G23420 HMGB6 high-mobility group box 6 (.1.... Lus10041009
[exp]
2.4 0.9316
AT5G64630 MUB3.9, NFB1, N... FASCIATA 2, Transducin/WD40 re... Lus10020888
[exp]
3.9 0.8896
AT3G18524 ATMSH2, MSH2 MUTS homolog 2 (.1) Lus10042967
[exp]
4.9 0.9174
AT3G60660 unknown protein Lus10010359
[exp]
6.5 0.9046
AT1G75150 unknown protein Lus10010814
[exp]
6.9 0.9155
AT1G67630 EMB2814, POLA2 EMBRYO DEFECTIVE 2814, DNA pol... Lus10015820
[exp]
8.0 0.9140
AT1G78650 POLD3 DNA-directed DNA polymerases (... Lus10013748
[exp]
9.2 0.8836
AT5G48450 SKS3 SKU5 similar 3 (.1) Lus10038239
[exp]
9.3 0.8561
AT5G05510 Mad3/BUB1 homology region 1 (.... Lus10040947
[exp]
12.2 0.9105
AT2G45260 Plant protein of unknown funct... Lus10024190
[exp]
17.8 0.8473

Lus10026361 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.