Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45890 396 / 2e-138 SAG12 senescence-associated gene 12 (.1) AT5G50260 364 / 1e-125 CEP1 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) AT3G48340 362 / 1e-124 CEP2 cysteine endopeptidase 2, Cysteine proteinases superfamily protein (.1) AT3G19390 364 / 3e-124 Granulin repeat cysteine protease family protein (.1) AT3G49340 347 / 6e-119 Cysteine proteinases superfamily protein (.1) AT2G27420 346 / 1e-118 Cysteine proteinases superfamily protein (.1) AT3G48350 343 / 2e-117 CEP3 cysteine endopeptidase 3, Cysteine proteinases superfamily protein (.1) AT3G19400 343 / 4e-117 Cysteine proteinases superfamily protein (.1.2) AT4G35350 342 / 4e-117 XCP1 xylem cysteine peptidase 1 (.1.2) AT1G29090 340 / 4e-116 Cysteine proteinases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042295 [exp] 685 / 0 AT5G45890 402 / 7e-141 senescence-associated gene 12 (.1) Lus10020722 [exp] 672 / 0 AT5G45890 392 / 1e-136 senescence-associated gene 12 (.1) Lus10029799 [exp] 669 / 0 AT5G45890 393 / 3e-137 senescence-associated gene 12 (.1) Lus10006542 [exp] 662 / 0 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10026073 [exp] 660 / 0 AT5G45890 393 / 5e-137 senescence-associated gene 12 (.1) Lus10009145 [exp] 660 / 0 AT5G45890 396 / 4e-138 senescence-associated gene 12 (.1) Lus10032406 [exp] 658 / 0 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10020730 [exp] 655 / 0 AT5G45890 392 / 1e-136 senescence-associated gene 12 (.1) Lus10002301 [exp] 653 / 0 AT5G45890 397 / 1e-138 senescence-associated gene 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G088600 [exp] 553 / 0 AT5G45890 406 / 8e-142 senescence-associated gene 12 (.1) Potri.005G089100 [exp] 551 / 0 AT5G45890 405 / 1e-141 senescence-associated gene 12 (.1) Potri.007G076100 [exp] 546 / 0 AT5G45890 411 / 7e-144 senescence-associated gene 12 (.1) Potri.007G075900 [exp] 546 / 0 AT5G45890 411 / 7e-144 senescence-associated gene 12 (.1) Potri.007G075300 [exp] 545 / 0 AT5G45890 406 / 6e-142 senescence-associated gene 12 (.1) Potri.007G076000 [exp] 543 / 0 AT5G45890 407 / 2e-142 senescence-associated gene 12 (.1) Potri.011G064900 [exp] 506 / 0 AT5G45890 401 / 3e-140 senescence-associated gene 12 (.1) Potri.007G075100 [exp] 482 / 6e-173 AT5G45890 371 / 4e-129 senescence-associated gene 12 (.1) Potri.013G118200 [exp] 478 / 2e-171 AT5G45890 387 / 2e-135 senescence-associated gene 12 (.1) Potri.013G126100 [exp] 477 / 3e-170 AT5G45890 386 / 2e-134 senescence-associated gene 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00112 [flax] [poplar] Peptidase_C1 Papain family cysteine protease CL0125 [flax] [poplar] PF08246 [flax] [poplar] Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29)
Representative CDS sequence Show only first row Show all	>Lus10026362 pacid=23156471 polypeptide=Lus10026362 locus=Lus10026362.g ID=Lus10026362.BGIv1.0 annot-version=v1.0 ATGGCGGCCAAATTCATTCTCTTTGCTTCCATCTTTGTATTGGGAGCTCTAGTTTCTCAGGCCACGGCGCGCTATACCCTTCCCGAAGCTTCCATACGCC TCAGGCATGAGCAGTGGATGACTCGTTACGGCCGAGTATACAATAGTCCTAGCGAAAAGGAGACTCGCTACCAGATCTTCAAAAACAATGTAGCCTTCAT CGACTCTTCTAATGCTTATGGAGACAAGCCTTACAAGCTTGGAGTCAATCAGTTTGCTGATTTGACTAACGAGGAATTCAAAGCCTCTAGAAACGGGTTC AAGGGCCACATGTGTTCTCCGCAACACGGACCTTTTAGGTACGAAAATGTGAGCGCGGTTCCAACGACCATGGACTGGAGGAAGAAGGGAGCAGTCACTC CTATCAAAGACCAAGGCCAGTGCGGAAGCTGCTGGGCATTTTCGGCCGTGGGGGCAATGGAAGGAATCCATCAGCTCAGTACTGGCAAATTGGTGTCCCT TTCGGAGCAAGAATTGGTTGACTGCGACACCAAGGGAGAGGACCAAGGATGCAACGGTGGGTTGATGGATGATGCGTTTAAGTTCGTTATTCAAAACAAG GGCTTGACCACCGAGACCAACTACCCTTATGACGCTGCTGACGGAACCTGTAATGCTAACAAAGAAGGCAGCAGTGCAGCCAAGATTACCGGGTATGAAG ATGTGCCGGCCAACGACGAGGCCGCATTGATGAAGGCAGTAGCGAGCCAACCGATTTCAGTGGCCATCGATGCAGGGGATTCGTCGTTCCAATTCTATTC GAGTGGAGTGTTCACTGGAGAATGCGGGACCGAACTGGACCATGGAGTGACAGCAGTTGGGTACGGAGAGAGCGGTGGGATGAAGTACTGGTTGGTGGAG AATTCGTGGGGAGCGCAGTGGGGAGAAGCCGGATACATTAGGATGCAGAAAGATGTTACCGCTAAAGAAGGTCTCTGCGGAATTGCTATGCAGGCTTCCT ACCCTACTGCCTAA
AA sequence Show only first row Show all	>Lus10026362 pacid=23156471 polypeptide=Lus10026362 locus=Lus10026362.g ID=Lus10026362.BGIv1.0 annot-version=v1.0 MAAKFILFASIFVLGALVSQATARYTLPEASIRLRHEQWMTRYGRVYNSPSEKETRYQIFKNNVAFIDSSNAYGDKPYKLGVNQFADLTNEEFKASRNGF KGHMCSPQHGPFRYENVSAVPTTMDWRKKGAVTPIKDQGQCGSCWAFSAVGAMEGIHQLSTGKLVSLSEQELVDCDTKGEDQGCNGGLMDDAFKFVIQNK GLTTETNYPYDAADGTCNANKEGSSAAKITGYEDVPANDEAALMKAVASQPISVAIDAGDSSFQFYSSGVFTGECGTELDHGVTAVGYGESGGMKYWLVE NSWGAQWGEAGYIRMQKDVTAKEGLCGIAMQASYPTA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10026362 [exp]	0	1
AT3G11690			unknown protein		Lus10021243 [exp]	6.5	0.8529
AT1G61800		ATGPT2, GPT2	ARABIDOPSIS GLUCOSE-6-PHOSPHAT...		Lus10007653 [exp]	9.3	0.8492
AT2G38600			HAD superfamily, subfamily III...		Lus10017060 [exp]	15.8	0.8421
					Lus10042011 [exp]	16.6	0.8482
AT4G38400		ATEXPL2, ATHEXP...	EXPANSIN L2, expansin-like A2 ...		Lus10025116 [exp]	21.5	0.8411
					Lus10036557 [exp]	21.5	0.8298
AT1G62740		Hop2	Hop2, stress-inducible protein...		Lus10004336 [exp]	22.1	0.8449
AT5G06920		FLA21	FASCICLIN-like arabinogalactan...		Lus10019675 [exp]	24.2	0.8297
AT4G25200		ATHSP23.6-MITO	mitochondrion-localized small ...		Lus10031730 [exp]	24.7	0.8414
AT1G67330			Protein of unknown function (D...		Lus10037026 [exp]	30.7	0.8279

Compare expression of checked genes

Lus10026362 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.