Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73530 108 / 2e-30 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G20930 87 / 1e-20 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G54580 79 / 6e-19 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G27330 69 / 8e-16 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G06210 70 / 9e-16 RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT4G13860 64 / 6e-14 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G37510 64 / 1e-13 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G46020 62 / 3e-13 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G08000 59 / 1e-11 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G13850 59 / 1e-11 ATGRP2, GR-RBP2 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042293 [exp] 170 / 1e-54 AT1G73530 100 / 7e-27 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10025573 [exp] 85 / 1e-19 AT3G20930 336 / 3e-109 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10027035 [exp] 83 / 3e-19 AT3G20930 360 / 8e-123 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10014802 [exp] 74 / 5e-16 AT5G54580 176 / 2e-54 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10003593 [exp] 74 / 6e-16 AT5G54580 174 / 6e-54 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10013306 [exp] 64 / 1e-13 AT5G06210 94 / 3e-25 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Lus10034685 [exp] 64 / 2e-12 AT5G61030 177 / 7e-54 glycine-rich RNA-binding protein 3 (.1) Lus10023758 [exp] 62 / 2e-12 AT2G37510 164 / 9e-53 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10016639 [exp] 62 / 2e-12 AT4G13850 166 / 1e-53 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G038200 [exp] 121 / 2e-35 AT1G73530 141 / 6e-43 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.008G022280 [exp] 88 / 6e-23 AT3G20930 203 / 2e-65 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.010G237200 [exp] 90 / 1e-21 AT3G20930 429 / 5e-150 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.008G022200 [exp] 89 / 3e-21 AT3G20930 427 / 3e-149 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.006G208500 [exp] 75 / 9e-18 AT5G06210 160 / 1e-51 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.011G130300 [exp] 73 / 1e-16 AT5G54580 161 / 2e-51 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G409800 [exp] 72 / 1e-16 AT5G54580 174 / 2e-56 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.009G160300 [exp] 71 / 2e-16 AT2G27330 98 / 1e-27 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.015G057400 [exp] 72 / 1e-15 AT5G61030 157 / 8e-47 glycine-rich RNA-binding protein 3 (.1) Potri.012G061600 [exp] 67 / 8e-14 AT5G61030 181 / 9e-56 glycine-rich RNA-binding protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10026364 pacid=23156523 polypeptide=Lus10026364 locus=Lus10026364.g ID=Lus10026364.BGIv1.0 annot-version=v1.0 ATGGCGGGTTTGACGGCTTCTTCCGCCGTTTCTCCTTATCCAGCTTCCTTCTCCGCAACTCAGCGACTTCACAACCTGAAATCGACGTCTTCAATTTGCT CCCACGCTATTATTTTGGAGAACACAGCGCTCCGATTCCCTCGCTCGCAACGTACCAGGCCTCAAAGACCTTCCTCAGTTTTGGCCTGCCTGCCTACATC GTCATCATCATCATCATCTGACCCTCCTTCTGCTCCGAAAACCAGGCTCTACATAAGCGGTCTATCATTTCGAACCACTGAAGAGGGTCTGCGAAATGCT TTCGAGGGTTTCGGCCAACTAGTGGAAGTTAATCTCGTGATGGATAAAATTGCAAGACGGCCTAGAGGGTTCGCCTTTGTTCGCTACGCCACCGAAGAGG AATCCGCAAAGGCCATCCAAGGAATGCATGGAAAGATTAATATGGCGATATTGAAGCATAGTTGGATAGAGCATTACCTCTAA
AA sequence Show only first row Show all	>Lus10026364 pacid=23156523 polypeptide=Lus10026364 locus=Lus10026364.g ID=Lus10026364.BGIv1.0 annot-version=v1.0 MAGLTASSAVSPYPASFSATQRLHNLKSTSSICSHAIILENTALRFPRSQRTRPQRPSSVLACLPTSSSSSSSDPPSAPKTRLYISGLSFRTTEEGLRNA FEGFGQLVEVNLVMDKIARRPRGFAFVRYATEEESAKAIQGMHGKINMAILKHSWIEHYL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73530			RNA-binding (RRM/RBD/RNP motif...		Lus10026364 [exp]	0	1
AT3G59040			Tetratricopeptide repeat (TPR)...		Lus10027829 [exp]	3.9	0.8992
AT1G04420			NAD(P)-linked oxidoreductase s...		Lus10028045 [exp]	5.7	0.8703
AT5G11450		PPD5	PsbP domain protein 5, Mog1/Ps...		Lus10022110 [exp]	10.0	0.9127
AT2G30695			unknown protein		Lus10008364 [exp]	14.1	0.9103
AT3G25470			bacterial hemolysin-related (....		Lus10002144 [exp]	18.0	0.8863
AT1G14270			CAAX amino terminal protease f...		Lus10036748 [exp]	19.5	0.8805
AT5G12920			Transducin/WD40 repeat-like su...		Lus10031253 [exp]	19.7	0.8912
AT1G73530			RNA-binding (RRM/RBD/RNP motif...		Lus10042293 [exp]	20.4	0.8820
AT2G38140		PSRP4	plastid-specific ribosomal pro...		Lus10002497 [exp]	20.6	0.8947
					Lus10008697 [exp]	22.0	0.8945

Compare expression of checked genes

Lus10026364 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.