Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60440 42 / 0.0001 MADS AGL62 AGAMOUS-like 62 (.1) AT4G36590 40 / 0.0003 MADS MADS-box transcription factor family protein (.1) AT1G65360 39 / 0.0007 MADS AGL23 AGAMOUS-like 23 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035456 [exp] 42 / 6e-05 AT5G60440 124 / 5e-34 AGAMOUS-like 62 (.1) Lus10031073 [exp] 42 / 0.0001 AT5G60440 129 / 5e-36 AGAMOUS-like 62 (.1) Lus10015726 [exp] 41 / 0.0001 AT5G60440 102 / 2e-26 AGAMOUS-like 62 (.1) Lus10003481 [exp] 41 / 0.0001 AT5G60440 99 / 7e-25 AGAMOUS-like 62 (.1) Lus10037450 [exp] 39 / 0.0005 AT5G60440 101 / 7e-26 AGAMOUS-like 62 (.1) Lus10003940 [exp] 39 / 0.0006 AT5G60440 102 / 2e-25 AGAMOUS-like 62 (.1) Lus10042291 [exp] 0 / 1 AT4G36590 61 / 2e-11 MADS-box transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G113800 [exp] 45 / 8e-06 AT5G60440 191 / 4e-60 AGAMOUS-like 62 (.1) Potri.004G002400 [exp] 44 / 2e-05 AT5G60440 107 / 3e-28 AGAMOUS-like 62 (.1) Potri.009G084200 [exp] 43 / 2e-05 AT5G60440 211 / 2e-68 AGAMOUS-like 62 (.1) Potri.009G045900 [exp] 43 / 3e-05 AT3G04100 121 / 2e-34 AGAMOUS-like 57 (.1) Potri.017G047300 [exp] 42 / 4e-05 AT5G60440 185 / 2e-57 AGAMOUS-like 62 (.1) Potri.016G118900 [exp] 40 / 0.0002 AT5G60440 123 / 4e-34 AGAMOUS-like 62 (.1) Potri.004G130900 [exp] 39 / 0.0005 AT3G04100 140 / 5e-42 AGAMOUS-like 57 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10026366 pacid=23156526 polypeptide=Lus10026366 locus=Lus10026366.g ID=Lus10026366.BGIv1.0 annot-version=v1.0 ATGTCGACCGCCGGCAAACTCAACAACGACGCCAACAACGAGAACTCCTCATCTTCTTCCTCCGCCGCCGCTGCGGTCCTAGACCGTGCGATCGTCTTCG TCGGCGGGAGGCGGCGGAAGATCGAGATCAAGAGAATCGAAGACCAGTCGAGCCTGTTCGTCGCGTTCTCCAAGCGGACGAAGGGCCTCTTCAAGAAACT GGACAAGTTCGTCAGTCTTAACCAGAAAGGAACGCAGGCGGCGGTGGTGACGTTCTCCCCTGCGGCGAACAAGGTGCACGCGTGCGGCACCCCTGCCGTT GAGCCTTGTATTCCATCGCTTCCTGGACGAGGTCGCCGGTGGACCGAAGGCCAAGCTGCTGCGGCAGGCGACGATTGGTTCGAAGAGAAAGATAATAGAG GGGAGGAATCGGATGTCGGTGCTGGAAGAATCAGAGGCGGCGTGGTTGGAATACCGACGGGAAGTAGAGATGAGAATGACGGAGGAGACTGTCCGTGA
AA sequence Show only first row Show all	>Lus10026366 pacid=23156526 polypeptide=Lus10026366 locus=Lus10026366.g ID=Lus10026366.BGIv1.0 annot-version=v1.0 MSTAGKLNNDANNENSSSSSSAAAAVLDRAIVFVGGRRRKIEIKRIEDQSSLFVAFSKRTKGLFKKLDKFVSLNQKGTQAAVVTFSPAANKVHACGTPAV EPCIPSLPGRGRRWTEGQAAAAGDDWFEEKDNRGEESDVGAGRIRGGVVGIPTGSRDENDGGDCP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36590	MADS		MADS-box transcription factor ...		Lus10026366 [exp]	0	1
					Lus10042238 [exp]	10.1	0.5553
AT1G77980	MADS	AGL66	AGAMOUS-like 66 (.1)		Lus10018493 [exp]	16.9	0.5203
AT3G47340		AT-ASN1, DIN6, ...	DARK INDUCIBLE 6, ARABIDOPSIS ...		Lus10031870 [exp]	19.7	0.5031
AT4G30010			unknown protein		Lus10001623 [exp]	26.8	0.5184
AT5G62280			Protein of unknown function (D...		Lus10006163 [exp]	33.3	0.4749
AT5G18020			SAUR-like auxin-responsive pro...		Lus10027690 [exp]	37.0	0.4771
AT5G37060		ATCHX24	cation/H+ exchanger 24, ARABID...		Lus10031852 [exp]	38.1	0.4986
					Lus10015636 [exp]	47.2	0.4744
AT3G10660		ATCPK2, CPK2	calmodulin-domain protein kina...		Lus10016190 [exp]	48.4	0.4773
AT2G18980			Peroxidase superfamily protein...		Lus10001622 [exp]	57.6	0.4727

Compare expression of checked genes

Lus10026366 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.