Plant FIBer expression Database

Lus10026367 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G05070 171 / 1e-55 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042290
[exp]
247 / 1e-85 AT3G05070 190 / 4e-63 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G067300
[exp]
168 / 2e-54 AT3G05070 149 / 8e-47 unknown protein
Potri.017G154100
[exp]
109 / 6e-32 AT3G05070 100 / 1e-28 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF08315 cwf18 cwf18 pre-mRNA splicing factor
Representative CDS sequence
>Lus10026367 pacid=23156388 polypeptide=Lus10026367 locus=Lus10026367.g ID=Lus10026367.BGIv1.0 annot-version=v1.0
ATGACGAGTGAGGAATCCTCCGTGGAACAAGCTGCAGCAGAGCGACGCGAAAGGCTGAAGGCTCTTAAAGCTGCCCAGGATCTCTCGAACACTCCTGATG
AAGGTACTGAACGAGCCGAAGATAAGACGGATCAGGAGGATGGACAGGCTGATGGAAATTATCCAGGGTTGAAGTTTCGAAATTATGTGCCTCAAGCAAA
GGAGCTTCAGGAGGGCAGGCTGGCTCCACCGGTACTGCCAAAGTTTGAAGACCCTGTTGCTGCAGCCCCTCCCCCAACAGAGAAGAAAGAGGATCCATTC
CTCAACATTGCTCCCAAGAAACCAAACTGGGACTTACGAAGAGACGTGCAGAAGAAGCTAGATAAGCTTGAGCGACGAACTCAGAAAGCTTTATACAAAC
TTATGGAGGAACAGGAGAAGGAGAGACAGGCAGCTGAAACCATTGAAGAAGATTAG
AA sequence
>Lus10026367 pacid=23156388 polypeptide=Lus10026367 locus=Lus10026367.g ID=Lus10026367.BGIv1.0 annot-version=v1.0
MTSEESSVEQAAAERRERLKALKAAQDLSNTPDEGTERAEDKTDQEDGQADGNYPGLKFRNYVPQAKELQEGRLAPPVLPKFEDPVAAAPPPTEKKEDPF
LNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKERQAAETIEED

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G05070 unknown protein Lus10026367
[exp]
0 1
AT1G76860 Small nuclear ribonucleoprotei... Lus10011293
[exp]
1.4 0.9187
AT3G22630 PRCGB, PBD1 20S proteasome beta subunit D1... Lus10041194
[exp]
2.2 0.9189
AT3G07910 unknown protein Lus10039527
[exp]
2.2 0.8998
AT3G52730 ubiquinol-cytochrome C reducta... Lus10014198
[exp]
3.5 0.9042
AT5G40580 PBB2 20S proteasome beta subunit PB... Lus10014581
[exp]
3.7 0.8862
AT1G05205 unknown protein Lus10039669
[exp]
3.9 0.9061
AT3G17210 ATHS1 A. THALIANA HEAT STABLE PROTEI... Lus10037823
[exp]
6.5 0.8658
AT5G53650 unknown protein Lus10008848
[exp]
6.9 0.8882
AT1G52600 Peptidase S24/S26A/S26B/S26C f... Lus10023131
[exp]
6.9 0.8685
AT2G27470 CCAAT NF-YB11 "nuclear factor Y, subunit B11... Lus10020621
[exp]
8.6 0.8330

Lus10026367 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.