Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73390 572 / 0 Endosomal targeting BRO1-like domain-containing protein (.1.2.3.4) AT1G17940 545 / 0 Endosomal targeting BRO1-like domain-containing protein (.1) AT5G14020 232 / 7e-72 Endosomal targeting BRO1-like domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042289 [exp] 737 / 0 AT1G73390 686 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1.2.3.4) Lus10031881 [exp] 654 / 0 AT1G73390 704 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1.2.3.4) Lus10031313 [exp] 636 / 0 AT1G73390 690 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1.2.3.4) Lus10041527 [exp] 289 / 7e-94 AT5G14020 483 / 6e-171 Endosomal targeting BRO1-like domain-containing protein (.1) Lus10012563 [exp] 287 / 4e-93 AT5G14020 486 / 9e-172 Endosomal targeting BRO1-like domain-containing protein (.1) Lus10035167 [exp] 273 / 2e-87 AT5G14020 497 / 4e-176 Endosomal targeting BRO1-like domain-containing protein (.1) Lus10031997 [exp] 269 / 5e-86 AT5G14020 504 / 9e-179 Endosomal targeting BRO1-like domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G067400 [exp] 622 / 0 AT1G73390 647 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1.2.3.4) Potri.017G154200 [exp] 558 / 0 AT1G73390 563 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1.2.3.4) Potri.017G062000 [exp] 283 / 3e-91 AT5G14020 524 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1) Potri.001G323600 [exp] 277 / 4e-89 AT5G14020 521 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03097 [flax] [poplar] BRO1 BRO1-like domain
Representative CDS sequence Show only first row Show all	>Lus10026368 pacid=23156478 polypeptide=Lus10026368 locus=Lus10026368.g ID=Lus10026368.BGIv1.0 annot-version=v1.0 ATGGGGTGCATAGCGTCTACGCCTAAGGAATCCAGTGGGAACAGGAGGAAGCCTGCCAGTATCGGGGAGCTATCTGTATATGTACCAGGGTTTCGAATAC CTAAACCTGCTGATTTCTCTCAGGCTCTTGATGACCATTTGTCGAAGAGCTTAGTTGAACGACTCTCGGCTCTAAGAACCCGTATTGTGGTTATGGCAGG CCAAGAAGCACCCACTGTCACCAGGACTCGGAGGCGAAGTGCTACTCGACATGGTGGTTCGTCGTTGGCTGATCTTTATCAAGCTCTTGAGAATTACTTG CCTGTTCTCCTGGGTTTGGTTAAAGATGGTAGCCAACTACAACATAAAATCCAATTTGTATGGGTGAATCAAGAGGATGAGGCAGAGGAAACAGCACTAT CAAACGCGTGGTATGAGGTACTCTCGGTTTTGCACTTGATGGCTGTACTATCATTATCACAGGCAAACTTGTTACTTCTCCCAAGAACATCTACTGACGG TTATCAACAGAAAGTATCAGAAGGGCCCCTGAATTTATCTGTTTCCTCATCTTGCTTAAACAGGGCCCCCGAATTTATCTGTTTCCCTGTGATAGAGAAC AAGCGAGCATCTGTCGACATATTCTTGAAGGCTGCTGGACACTTGGATTGTGCAGTTAGGCATGTTCTTCCGCATTTACCTGCTGCACTGAGGTTTGATA CAGATCGAAGACTTGCAGAGAGACTTACCAGTGGACCTTGCCGAAGCAGCGTCGAAACCCAACACGGGAGGGTTTTAAATACCACGAAAGCCACACTGGC GGTGAAGCGGAGGCTCGCCTGTGAGATGGTGAAGTACTGGCAGCAGGCTCAAGATAACATAATGAATCTTCCGCTAGCAAATGGCTGGGGTGAAAAGCAC ACACTTTTCATCAAATGGAAATATGTGGAATCAAGGGCTGCAGCTTATTATTACCACGGCTTAATCCTTGACGAAGGGAACACTGACAAATCTCATGGGA TGGCCGTAGATGCACTGCAGGCAGCAGATGAGTATTTCAAAGAGAGCAAAAGGGCATGCGAGGCGTTTAATGCAGCTTCCCCTACGTCGAGAAATCCACC ACTTTGGGGAACCATGAAGTACCTATCAGAGAAAATCCCCAGAGATACGTCCAGCAAAGTGCGAAGTAATCGCGATCTATACTCTCATGAAAAAATCATG GAGATTGCACCAACACTACCTGATTTCGCATTAGCCCTAAAACCCGACGATTATCAGCTACCTCCAGTTGATCCCTCCTGGAATGATGAGAACAACAGAG GGCCAATCTCGAATGGAAACCAACTCGAATGCTGA
AA sequence Show only first row Show all	>Lus10026368 pacid=23156478 polypeptide=Lus10026368 locus=Lus10026368.g ID=Lus10026368.BGIv1.0 annot-version=v1.0 MGCIASTPKESSGNRRKPASIGELSVYVPGFRIPKPADFSQALDDHLSKSLVERLSALRTRIVVMAGQEAPTVTRTRRRSATRHGGSSLADLYQALENYL PVLLGLVKDGSQLQHKIQFVWVNQEDEAEETALSNAWYEVLSVLHLMAVLSLSQANLLLLPRTSTDGYQQKVSEGPLNLSVSSSCLNRAPEFICFPVIEN KRASVDIFLKAAGHLDCAVRHVLPHLPAALRFDTDRRLAERLTSGPCRSSVETQHGRVLNTTKATLAVKRRLACEMVKYWQQAQDNIMNLPLANGWGEKH TLFIKWKYVESRAAAYYYHGLILDEGNTDKSHGMAVDALQAADEYFKESKRACEAFNAASPTSRNPPLWGTMKYLSEKIPRDTSSKVRSNRDLYSHEKIM EIAPTLPDFALALKPDDYQLPPVDPSWNDENNRGPISNGNQLEC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73390			Endosomal targeting BRO1-like ...		Lus10026368 [exp]	0	1
AT5G36930			Disease resistance protein (TI...		Lus10000738 [exp]	1.0	0.8747
					Lus10030083 [exp]	2.4	0.8532
AT2G26600			Glycosyl hydrolase superfamily...		Lus10038099 [exp]	2.8	0.8233
AT4G36400		D2HGDH	D-2-hydroxyglutarate dehydroge...		Lus10041792 [exp]	6.7	0.8275
AT4G01790			Ribosomal protein L7Ae/L30e/S1...		Lus10007191 [exp]	6.7	0.8221
AT1G61770			Chaperone DnaJ-domain superfam...		Lus10020062 [exp]	7.0	0.8014
AT2G38430			unknown protein		Lus10003276 [exp]	8.1	0.8121
AT5G39360		EDL2	EID1-like 2 (.1)		Lus10042699 [exp]	12.4	0.7648
AT2G19560		ESSP1, AtTHP1, ...	ectopic expression of seed sto...		Lus10032680 [exp]	16.4	0.7650
AT4G03230			S-locus lectin protein kinase ...		Lus10038212 [exp]	16.8	0.7482

Compare expression of checked genes

Lus10026368 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.