Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68130 358 / 1e-121 C2H2ZnF IDD14beta, IDD14alpha, ATIDD14 indeterminate(ID)-domain 14 (.1), indeterminate(ID)-domain 14 (.2) AT1G25250 345 / 6e-117 C2H2ZnF ATIDD16 indeterminate(ID)-domain 16 (.1) AT2G01940 323 / 3e-107 C2H2ZnF SGR5, ATIDD15 SHOOT GRAVITROPISM 5, ARABIDOPSIS THALIANA INDETERMINATE\(ID\)-DOMAIN 15, C2H2-like zinc finger protein (.1.2.3) AT1G55110 224 / 1e-68 C2H2ZnF ARABIDOPSISTHALIANAINDETERMINATE(ID)-DOMAIN7, ATIDD7, ARABIDOPSISTHALIANAINDETERMINATE(ID)-DOMAIN7 indeterminate(ID)-domain 7 (.1) AT1G03840 223 / 4e-68 C2H2ZnF MGP Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) AT1G14580 222 / 5e-68 C2H2ZnF C2H2-like zinc finger protein (.1.2) AT2G02080 222 / 2e-67 C2H2ZnF ATIDD4 indeterminate(ID)-domain 4 (.1), indeterminate(ID)-domain 4 (.2) AT5G03150 222 / 2e-67 C2H2ZnF JKD JACKDAW, C2H2-like zinc finger protein (.1) AT5G66730 222 / 2e-67 C2H2ZnF IDD1, ENY INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) AT3G50700 221 / 2e-67 C2H2ZnF ATIDD2 indeterminate(ID)-domain 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031314 [exp] 327 / 1e-108 AT1G25250 426 / 2e-146 indeterminate(ID)-domain 16 (.1) Lus10031882 [exp] 312 / 2e-105 AT2G01940 324 / 1e-109 SHOOT GRAVITROPISM 5, ARABIDOPSIS THALIANA INDETERMINATE\(ID\)-DOMAIN 15, C2H2-like zinc finger protein (.1.2.3) Lus10042288 [exp] 311 / 2e-105 AT2G01940 112 / 4e-29 SHOOT GRAVITROPISM 5, ARABIDOPSIS THALIANA INDETERMINATE\(ID\)-DOMAIN 15, C2H2-like zinc finger protein (.1.2.3) Lus10008396 [exp] 233 / 3e-71 AT3G13810 339 / 1e-110 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3) Lus10010820 [exp] 224 / 8e-71 AT3G50700 349 / 2e-119 indeterminate(ID)-domain 2 (.1) Lus10041723 [exp] 228 / 1e-69 AT3G50700 489 / 1e-170 indeterminate(ID)-domain 2 (.1) Lus10004497 [exp] 226 / 3e-69 AT1G55110 341 / 5e-113 indeterminate(ID)-domain 7 (.1) Lus10007168 [exp] 227 / 4e-69 AT5G66730 386 / 2e-129 INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) Lus10004840 [exp] 226 / 8e-69 AT3G13810 337 / 1e-110 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G101200 [exp] 347 / 4e-117 AT1G68130 428 / 1e-148 indeterminate(ID)-domain 14 (.1), indeterminate(ID)-domain 14 (.2) Potri.015G033100 [exp] 328 / 3e-109 AT2G01940 431 / 1e-148 SHOOT GRAVITROPISM 5, ARABIDOPSIS THALIANA INDETERMINATE\(ID\)-DOMAIN 15, C2H2-like zinc finger protein (.1.2.3) Potri.012G040200 [exp] 328 / 3e-109 AT2G01940 420 / 2e-144 SHOOT GRAVITROPISM 5, ARABIDOPSIS THALIANA INDETERMINATE\(ID\)-DOMAIN 15, C2H2-like zinc finger protein (.1.2.3) Potri.008G140400 [exp] 326 / 8e-109 AT1G68130 437 / 5e-152 indeterminate(ID)-domain 14 (.1), indeterminate(ID)-domain 14 (.2) Potri.002G208444 [exp] 239 / 2e-73 AT3G50700 311 / 2e-100 indeterminate(ID)-domain 2 (.1) Potri.013G019200 [exp] 236 / 7e-73 AT3G50700 327 / 4e-107 indeterminate(ID)-domain 2 (.1) Potri.005G027200 [exp] 236 / 9e-73 AT1G03840 300 / 7e-96 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Potri.006G129300 [exp] 232 / 2e-71 AT5G03150 371 / 1e-123 JACKDAW, C2H2-like zinc finger protein (.1) Potri.007G028800 [exp] 233 / 3e-71 AT5G66730 416 / 1e-140 INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) Potri.016G088500 [exp] 228 / 9e-70 AT5G03150 353 / 1e-116 JACKDAW, C2H2-like zinc finger protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026369 pacid=23156608 polypeptide=Lus10026369 locus=Lus10026369.g ID=Lus10026369.BGIv1.0 annot-version=v1.0 ATGTTCCCAATCAAAAATTATTCTTCATCTCCTCTAGAAAATAACGATGACTCCTCCTCCGCCGCCGCCGTGAAGAGGAAGCGCCGCCCGGCGGGGACGC CAGATCCGGACGCGGAGGTGGTTTCCTTATCTCCTCGGACGCTGATGGAGTCCGACAGGTACGTGTGCGAGATCTGCAACCAAGGGTTCCAGCGGGACCA GAACCTGCAGATGCACCGCCGCCGACATAAGGTGCCCTGGAAGCTTCTGAAGAGGGACGCGGAGACGGCTGAGGCGGCGGTTAGGAAGCGGGTTTTTGTG TGCCCCGAACCGAGCTGCTTGCACCACGACCCGTGTCACGCGCTGGGGGATTTGGTTGGGATAAAGAAGCACTTCAGGAGGAAGCATAGTAATCAGAGGC AGTGGGTTTGTGACAAGTGCGGGAAAGGGTACGCCGTTCAGTCGGATTACAAAGCTCATCTCAAGACTTGCGGCACTCGCGGCCACTCCTGCGACTGCGG CCGCGTCTTCTCCAGGGTGGAAAGTTTCATTGAGCACCAAGACTCTTGCACCATGAGCGGTCTCCGACCAGAACCAAACCCTTTTCCATGCTCTTCTAGC CCCAGCCCTTCCGACGTCGACACCCCATCACTGCCACATCCGCCTCCTCCTCGCCCGATCATCCCTCCGCCACGACCACTACCGTCCTTCTACTCCAACA ACCACCGAAACCCGATGATGATCACCTCTCCCTTCATGTCATTCAACTCCGATATTACACCACACTACAACAACAACAACAATAACAACAAAGAAACACA AAATATAGACCTCGACCTCAACCTCCAGCTGTCCGTCGGGTGTTCAACACACCACGGAGGAAGAGGTCAGATGATGAGGGCAGAGAAGGGTTACGCGGAG GAGGCGAGGAAGGAGGCAAAGCGGCAGATACAGCTGGCGGAGGAGGAGTTCGCCAACGCAAAGATGAGGCGTCAGCATGCCCAGGCTGAGCTGGACAGAG CCCACTGTTTGAAAGAGCAAGCCGTGAAGCAGATGAGGTCCTCCGACGTCGTGTTTCTGAACGTCATGACATGTACTGGCTGCCGGCAGAAGTTGACGGC GCATCAGGCGGCGGATGAGAACTCTCTGGTGGTGAGTTACGTGTCATCTGGAGTTACGGATCATGGCGGCGAAGTGGAGAAAAGAAGATGA
AA sequence Show only first row Show all	>Lus10026369 pacid=23156608 polypeptide=Lus10026369 locus=Lus10026369.g ID=Lus10026369.BGIv1.0 annot-version=v1.0 MFPIKNYSSSPLENNDDSSSAAAVKRKRRPAGTPDPDAEVVSLSPRTLMESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRDAETAEAAVRKRVFV CPEPSCLHHDPCHALGDLVGIKKHFRRKHSNQRQWVCDKCGKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDSCTMSGLRPEPNPFPCSSS PSPSDVDTPSLPHPPPPRPIIPPPRPLPSFYSNNHRNPMMITSPFMSFNSDITPHYNNNNNNNKETQNIDLDLNLQLSVGCSTHHGGRGQMMRAEKGYAE EARKEAKRQIQLAEEEFANAKMRRQHAQAELDRAHCLKEQAVKQMRSSDVVFLNVMTCTGCRQKLTAHQAADENSLVVSYVSSGVTDHGGEVEKRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01940	C2H2ZnF	SGR5, ATIDD15	SHOOT GRAVITROPISM 5, ARABIDOP...		Lus10026369 [exp]	0	1
AT2G01940	C2H2ZnF	SGR5, ATIDD15	SHOOT GRAVITROPISM 5, ARABIDOP...		Lus10042288 [exp]	2.0	0.8294
AT5G60890	MYB	AtMYB34, MYB34,...	ALTERED TRYPTOPHAN REGULATION ...		Lus10015713 [exp]	4.0	0.7619
AT5G67385			Phototropic-responsive NPH3 fa...		Lus10011082 [exp]	5.5	0.8039
AT5G67385			Phototropic-responsive NPH3 fa...		Lus10011081 [exp]	11.4	0.7979
AT5G13790	MADS	AGL15	AGAMOUS-like 15 (.1)		Lus10039580 [exp]	11.4	0.7612
AT5G40960			Protein of unknown function (D...		Lus10035200 [exp]	16.9	0.7195
AT1G70280			NHL domain-containing protein ...		Lus10039484 [exp]	17.3	0.7545
AT1G08530			unknown protein		Lus10021985 [exp]	21.1	0.7225
AT2G26550		HO2	heme oxygenase 2 (.1.2.3)		Lus10021748 [exp]	22.3	0.7349
AT5G62670		AHA11	H\(+\)-ATPase 11, H\(+\)-ATPas...		Lus10003259 [exp]	23.2	0.7028

Compare expression of checked genes

Lus10026369 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.