Plant FIBer expression Database

Lus10026370 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G08590 992 / 0 iPGAM2 2,3-biphosphoglycerate-independent phosphoglycerate mutase 2, Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (.1.2)
AT1G09780 976 / 0 iPGAM1 2,3-biphosphoglycerate-independent phosphoglycerate mutase 1, Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042283
[exp]
1150 / 0 AT3G08590 993 / 0.0 2,3-biphosphoglycerate-independent phosphoglycerate mutase 2, Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (.1.2)
Lus10031877
[exp]
1063 / 0 AT3G08590 979 / 0.0 2,3-biphosphoglycerate-independent phosphoglycerate mutase 2, Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (.1.2)
Lus10031309
[exp]
1062 / 0 AT3G08590 977 / 0.0 2,3-biphosphoglycerate-independent phosphoglycerate mutase 2, Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G142900
[exp]
1054 / 0 AT1G09780 927 / 0.0 2,3-biphosphoglycerate-independent phosphoglycerate mutase 1, Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (.1)
Potri.006G113300
[exp]
1046 / 0 AT3G08590 989 / 0.0 2,3-biphosphoglycerate-independent phosphoglycerate mutase 2, Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0088 Alk_phosphatase PF01676 Metalloenzyme Metalloenzyme superfamily
CL0088 PF06415 iPGM_N BPG-independent PGAM N-terminus (iPGM_N)
Representative CDS sequence
>Lus10026370 pacid=23156506 polypeptide=Lus10026370 locus=Lus10026370.g ID=Lus10026370.BGIv1.0 annot-version=v1.0
ATGGGTAGCTCCGGCGAGAACGCATGGAAGCTGGCGGACCATCCGAAGCTTCCCAAGGGGAAGACGATTGCCTTGATTGTTTTGGACGGCTGGGGTGAGG
CTAAGCCCGATCAGTACAATTGTATCCATGTTGCTGAAACTCCCACCATGGATTCTTTCAAGACGACTGCTCCCGAAAAGTGGAGATTGATTAAGGCCCA
TGGAACTGCAGTGGGTCTCCCAAGCGAGGATGACATGGGTAACAGTGAAGTTGGCCACAATGCTCTTGGAGCTGGCCGTATCTTCGCTCAGGGTGCTAAG
CTTGTTGATGCTGCTCTGGCCACTGGGAAGATGTTTGAGGGAGAGGGATTTAAGTACATCCAACAATCCTTTGATAAGGGAACACTGCACCTAATTGGGT
TGTTGAGTGATGGTGGAGTTCACTCCAGGCTTGATCAAGTTCAGTTGTTGCTTAAAGGTGCCAGTGAGCATGGTGCTAAAAGGATTCGCCTCCACATTCT
TACTGATGGACGTGATGTGATTGATGGTACCAGTGTTGGGTTTGTGGAAACTCTGGAGAATGATCTTGCCAACTTGCGGGAGAAGGGTGTTGATGCACAG
ATTGCATCTGGTGGAGGACGTATGTACGTGACTATGGATCGTTATGAGAACGACTGGAGTGTTGTGAAGAGAGGATGGGATGCCCAGGTTCTTGGTGAAG
CCCCTTACAAGTTTAAGAGCGCCGTAGAAGCTGTTAAAAAGCTAAGGGAAACCCCTAAAGCCAATGACCAGTATCTGCCTCCTTTTGTTATTGTTGATGA
CAGTGGTAAGGCTGTCGGGCCAATTGTTGATGGTGATGCAGTCGTCACATTCAACTTCCGTGCTGATCGTATGACTATGCTTGCTAAGGCACTTGAATAC
GCGGACTTTGACAAGTTCGACCGTGTGAGAGTTCCTAAGATCAATTACGCTGGAATGCTCCAGTATGATGGGGAGTTGATGCTTCCAAGCCGTTATCTTG
TTTCTCCTCCAGAAATAGAGAGAACATCTGGTGAATATTTGGTGCATAATGGTGTTAGCACCTTTGCTTGCAGTGAGACGGTGAAATTCGGTCACGTTAC
CTTCTTCTGGAATGGAAATCGCTCGGGATATTTCAACTCAGAAATGGAAGAATACGTTGAGATTCCAAGTGATGTTGGGATCACATTCAATGTCAAACCT
AAGATGAAGGCAATAGAGATTGCAGAGAAGGCACGAGATGCCATACTCAGTGGAAAATTCAATCAGGTTCGCGTTAACCTACCAAACGGAGACATGGTGG
GGCACACCGGAGATGTTGAAGCTACTGTTGTCAGTTGCAAGGTTGCTGATGAAGCGGTCAAGATCATGATTGACGCGATTGAGCAAGTTGGTGGAATTTA
CGTGGTCACTGCTGATCATGGAAATGCTGAGGACATGGTTAAGAGAGACAAATCTGGGAAGCCAGCACTCGACAAGTCTGGCAACGTTCAAATCCTGACC
TCTCACACCCTCCAGCCCGTACCTATTGCAATCGGTGGTCCAGGATTGGTGCCTGGGGTGAGGTTCCGCACCGATGTCCCAACCGGTGGACTTGCTAATG
TTGCAGCAACTGTGATGAATCTGCATGGGCTCGAGGCCCCAAGCGATTACGAGACAACCCTGATTGAAGTCGTCGACTAG
AA sequence
>Lus10026370 pacid=23156506 polypeptide=Lus10026370 locus=Lus10026370.g ID=Lus10026370.BGIv1.0 annot-version=v1.0
MGSSGENAWKLADHPKLPKGKTIALIVLDGWGEAKPDQYNCIHVAETPTMDSFKTTAPEKWRLIKAHGTAVGLPSEDDMGNSEVGHNALGAGRIFAQGAK
LVDAALATGKMFEGEGFKYIQQSFDKGTLHLIGLLSDGGVHSRLDQVQLLLKGASEHGAKRIRLHILTDGRDVIDGTSVGFVETLENDLANLREKGVDAQ
IASGGGRMYVTMDRYENDWSVVKRGWDAQVLGEAPYKFKSAVEAVKKLRETPKANDQYLPPFVIVDDSGKAVGPIVDGDAVVTFNFRADRMTMLAKALEY
ADFDKFDRVRVPKINYAGMLQYDGELMLPSRYLVSPPEIERTSGEYLVHNGVSTFACSETVKFGHVTFFWNGNRSGYFNSEMEEYVEIPSDVGITFNVKP
KMKAIEIAEKARDAILSGKFNQVRVNLPNGDMVGHTGDVEATVVSCKVADEAVKIMIDAIEQVGGIYVVTADHGNAEDMVKRDKSGKPALDKSGNVQILT
SHTLQPVPIAIGGPGLVPGVRFRTDVPTGGLANVAATVMNLHGLEAPSDYETTLIEVVD

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G08590 iPGAM2 2,3-biphosphoglycerate-indepen... Lus10026370
[exp]
0 1
AT2G39750 S-adenosyl-L-methionine-depend... Lus10004702
[exp]
6.2 0.8570
AT4G35300 TMT2 tonoplast monosaccharide trans... Lus10022989
[exp]
6.8 0.8528
AT4G35300 TMT2 tonoplast monosaccharide trans... Lus10001386
[exp]
13.1 0.8267
AT2G01970 Endomembrane protein 70 protei... Lus10026371
[exp]
14.8 0.8406
AT2G01070 Lung seven transmembrane recep... Lus10036166
[exp]
16.0 0.8373
AT1G07670 ATECA4 endomembrane-type CA-ATPase 4 ... Lus10038484
[exp]
17.3 0.8203
AT1G23190 PGM3 phosphoglucomutase 3, Phosphog... Lus10003712
[exp]
19.5 0.8360
AT1G31070 GlcNAc1pUT1 N-acetylglucosamine-1-phosphat... Lus10038366
[exp]
20.1 0.8301
AT1G62020 Coatomer, alpha subunit (.1) Lus10016481
[exp]
22.2 0.8310
AT5G64740 PRC1, IXR2, E11... PROCUSTE 1, ISOXABEN RESISTANT... Lus10003526
[exp]
29.7 0.8114

Lus10026370 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.