Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14670 786 / 0 Endomembrane protein 70 protein family (.1) AT2G01970 785 / 0 Endomembrane protein 70 protein family (.1) AT5G37310 753 / 0 Endomembrane protein 70 protein family (.1) AT1G08350 435 / 3e-144 Endomembrane protein 70 protein family (.1.2) AT1G10950 324 / 1e-101 AtTMN1 transmembrane nine 1 (.1) AT1G73470 271 / 1e-84 unknown protein AT2G24170 242 / 2e-70 Endomembrane protein 70 protein family (.1) AT1G55130 233 / 5e-67 AtTMN6 transmembrane nine 6, Endomembrane protein 70 protein family (.1) AT3G13772 232 / 1e-66 AtTMN7 transmembrane nine 7 (.1) AT5G25100 223 / 2e-63 Endomembrane protein 70 protein family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042286 [exp] 897 / 0 AT2G01970 1061 / 0.0 Endomembrane protein 70 protein family (.1) Lus10031308 [exp] 877 / 0 AT2G01970 1061 / 0.0 Endomembrane protein 70 protein family (.1) Lus10031876 [exp] 876 / 0 AT2G01970 1059 / 0.0 Endomembrane protein 70 protein family (.1) Lus10004873 [exp] 442 / 7e-147 AT1G08350 668 / 0.0 Endomembrane protein 70 protein family (.1.2) Lus10001368 [exp] 314 / 8e-98 AT1G10950 990 / 0.0 transmembrane nine 1 (.1) Lus10001291 [exp] 313 / 3e-97 AT1G10950 1000 / 0.0 transmembrane nine 1 (.1) Lus10012697 [exp] 315 / 4e-97 AT1G10950 947 / 0.0 transmembrane nine 1 (.1) Lus10015463 [exp] 281 / 1e-85 AT1G10950 910 / 0.0 transmembrane nine 1 (.1) Lus10000222 [exp] 239 / 2e-69 AT5G10840 1071 / 0.0 Endomembrane protein 70 protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G144181 [exp] 774 / 0 AT5G37310 979 / 0.0 Endomembrane protein 70 protein family (.1) Potri.017G144241 [exp] 774 / 0 AT5G37310 989 / 0.0 Endomembrane protein 70 protein family (.1) Potri.004G075450 [exp] 758 / 0 AT5G37310 953 / 0.0 Endomembrane protein 70 protein family (.1) Potri.012G042300 [exp] 659 / 0 AT1G14670 762 / 0.0 Endomembrane protein 70 protein family (.1) Potri.004G203200 [exp] 461 / 2e-154 AT1G08350 671 / 0.0 Endomembrane protein 70 protein family (.1.2) Potri.004G075525 [exp] 369 / 2e-122 AT5G37310 523 / 0.0 Endomembrane protein 70 protein family (.1) Potri.004G218300 [exp] 349 / 3e-111 AT1G10950 920 / 0.0 transmembrane nine 1 (.1) Potri.003G015300 [exp] 338 / 8e-107 AT1G10950 897 / 0.0 transmembrane nine 1 (.1) Potri.015G033200 [exp] 288 / 7e-91 AT1G73470 395 / 1e-137 unknown protein Potri.003G038700 [exp] 238 / 7e-69 AT3G13772 1085 / 0.0 transmembrane nine 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02990 [flax] [poplar] EMP70 Endomembrane protein 70
Representative CDS sequence Show only first row Show all	>Lus10026371 pacid=23156378 polypeptide=Lus10026371 locus=Lus10026371.g ID=Lus10026371.BGIv1.0 annot-version=v1.0 ATGGCGGGGAAGAAGATGGTGGCGCTCCTATTCGTCGCCGTTTTGGTGGTCGTCTTCGGAGCAGATCAGGTGAGATCTGACGCCTCCGATCACCGGTACA AAGACGGAGATCAGGTTCCTCTCTATGCTAACAAAGTTGGCCCGTTTCACAACCCGAGTGAAACGTACCGTTATTTTGACCTTCCATTCTGCTTTCCAGC ACATATGAAGGAAAAAAAGGAGGCTCTGGGTGAAGTACTCAATGGAGATCGGTTAGTTAGTGCTCCATACCAGCTTGACTTCCTCCGTGAGAAGGATTCT GAAGTTGTTTGTAAGAAGAGGCTTTCAAAGGAAGAAGTGGACCAGTTCAGAGCTGCTGTTAAGAAAGATTACTATTTCCAGATGTATTATGATGACTTAC CCATCTGGGGGTTCATAGGGAAGGTTGACAAGGAAGGCAAAGACCCCAGCGACTATAAATATTATCTTTTCAAGCACATTCACTTTGATATCTTTTACAA CAAAGACCGTGTGATTGAAATCAATGTCCGAACTGATCCTAATGCACTGGTGGATGTTACTGAGGATAAGGAAGTAGATGTGGAGTTCTTATATACTGTG AAGTGGAAGGAAACCAATACTCCTTTTGATAAAAGGATGGACAAGTACTCACAGTCTTCTTCATTGCCCCATCATTTGGAGATCCACTGGTTCTCAATCA TAAATTCTTGTGTGACAGTTCTGCTTCTTACTGGCTTTTTGGCTACTATCCTCATGCGGGTGCTTAAGAATGATTTTGTCAAGTATGCTCATGATGAGGA AGCTGCTGAAGACCAGGAAGAGACAGGTTGGAAGTATATTCACGGAGACGTGTTTAGATATCCAAAATACAAATCCCTATTTGCCGCATCTCTCGGTTCT GGAACCCAATTATTCACTCTGACCATTTTCATTTTTATTCTGGCATTGGTTGGGGTGTTTTATCCATACAACCGGGGAGCCCTATTCACTGCATTAGTCG TCATATATGCTCTTACATCAGGAATCGCTGGATACACTGCAACTTCCTTTTACTGTCAGCTTGAAGGAACTAACTGGGTTAGGAATCTGCTGTTGACTGG ATGCCTCTTCTGCGGGCCTCTTTTCCTAACCTTCTGTTTCCTTAACACTGTTGCAATCGTCTACACTGCTACTGCCGCTCTTCCTTTCGGTACAATTGTT GTGATTGTGCTCATATGGACACTTGTGACTTCTCCACTACTTGTTTTGGGTGGAATTGCCGGTAAGAATAGCAAGGCTGAGTTCCAAGCTCCTTGCCGCA CCACCAAATATCCCAGGGAGATTCCGCCCTTGCCATGGTACAGGGGAACCATCCCTCAGATGGCCATGGCTGGATTTCTTCCATTCAGTGCTATCTACAT CGAGCTCTACTACATCTTTGCGAGTGTGTGGGGTCACAGGATCTATACTATCTACAGCATCTTGTTCATCGTATTCATCATTCTCCTTATAGTCACTGCT TTCATTACTGTGGCATTGACCTATTTATTTTATTCTGGTGCCTGTTACTTCAGTCCTCTGCTTAAGTCAGTGGCGAAGAGAGCTGAAGTTGATTATGTCA TGATCGAGCAAGACCTTGAGGAGCGAGAGGATTTCATTGCTGCACTTGAATCCCGGTTTCTATTCCTAGCAGCTGATGCACGGTCTACGTTAAGTGAAGA GTCAGGAACTTTCCCAGGTTTATGGGAATCATCCAAGCCAATTGATGGCCAAGGCAGTCTGGAACTTGGATTAAGTAAATGGAAGTTACAAGGCCTTGGT GCATTGAAAGAAGTGGTAGAAGAGCTCCAGCCAATTATTTTGAAGGGTGGTAGTGCTCTTACACTGTCCAAAGTTTATCAATTGTTAGCTGGGAAATTAA TGGGCAAGGTGGTTCGTGACGCTGCCAACTATCAAATAAAAAAGGAGATCGTGAAGAAGGGTGGACAATTAGCTGCCATGAATTTAGAAGCTAGAGCAGC CTTGATTGCAGCGAAGCAGGGTTTGGCTGGCGCTGCATCAAAATATATGGGCCTTAGAAGTGCAATGTCATTCCTTGGCCCAGTGATGTGGGGAACATTA CTGGCAGATGTGGTTATTCAGATGCTTGGCACTGATTATGCTAGAGTCCTGAGAGCCGTTTACGCCTTTGCTCAGGTATCTATCTGA
AA sequence Show only first row Show all	>Lus10026371 pacid=23156378 polypeptide=Lus10026371 locus=Lus10026371.g ID=Lus10026371.BGIv1.0 annot-version=v1.0 MAGKKMVALLFVAVLVVVFGADQVRSDASDHRYKDGDQVPLYANKVGPFHNPSETYRYFDLPFCFPAHMKEKKEALGEVLNGDRLVSAPYQLDFLREKDS EVVCKKRLSKEEVDQFRAAVKKDYYFQMYYDDLPIWGFIGKVDKEGKDPSDYKYYLFKHIHFDIFYNKDRVIEINVRTDPNALVDVTEDKEVDVEFLYTV KWKETNTPFDKRMDKYSQSSSLPHHLEIHWFSIINSCVTVLLLTGFLATILMRVLKNDFVKYAHDEEAAEDQEETGWKYIHGDVFRYPKYKSLFAASLGS GTQLFTLTIFIFILALVGVFYPYNRGALFTALVVIYALTSGIAGYTATSFYCQLEGTNWVRNLLLTGCLFCGPLFLTFCFLNTVAIVYTATAALPFGTIV VIVLIWTLVTSPLLVLGGIAGKNSKAEFQAPCRTTKYPREIPPLPWYRGTIPQMAMAGFLPFSAIYIELYYIFASVWGHRIYTIYSILFIVFIILLIVTA FITVALTYLFYSGACYFSPLLKSVAKRAEVDYVMIEQDLEEREDFIAALESRFLFLAADARSTLSEESGTFPGLWESSKPIDGQGSLELGLSKWKLQGLG ALKEVVEELQPIILKGGSALTLSKVYQLLAGKLMGKVVRDAANYQIKKEIVKKGGQLAAMNLEARAALIAAKQGLAGAASKYMGLRSAMSFLGPVMWGTL LADVVIQMLGTDYARVLRAVYAFAQVSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01970			Endomembrane protein 70 protei...		Lus10026371 [exp]	0	1
AT1G62020			Coatomer, alpha subunit (.1)		Lus10016481 [exp]	1.0	0.9697
AT4G17180			O-Glycosyl hydrolases family 1...		Lus10039095 [exp]	1.7	0.9382
AT5G18280		ATAPY2	apyrase 2 (.1.2)		Lus10006546 [exp]	2.0	0.9440
AT4G35300		TMT2	tonoplast monosaccharide trans...		Lus10022989 [exp]	3.2	0.9112
AT3G05420		ACBP4	acyl-CoA binding protein 4 (.1...		Lus10031497 [exp]	3.5	0.9315
AT2G01070			Lung seven transmembrane recep...		Lus10036166 [exp]	4.6	0.9189
AT1G80510			Transmembrane amino acid trans...		Lus10034093 [exp]	5.5	0.9192
AT5G35730			EXS (ERD1/XPR1/SYG1) family pr...		Lus10015099 [exp]	6.2	0.8976
AT3G13772		AtTMN7	transmembrane nine 7 (.1)		Lus10037643 [exp]	6.9	0.9184
AT5G52180			unknown protein		Lus10031574 [exp]	7.7	0.9086

Compare expression of checked genes

Lus10026371 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.