Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17120 246 / 6e-79 LYM2 lysm domain GPI-anchored protein 2 precursor (.1) AT1G77630 134 / 2e-35 LYM3 lysin-motif \(LysM\) domain protein 3, Peptidoglycan-binding LysM domain-containing protein (.1) AT1G21880 127 / 8e-34 LYM1 lysm domain GPI-anchored protein 1 precursor (.1.2) AT2G23770 45 / 9e-05 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023945 [exp] 416 / 3e-145 AT2G17120 280 / 4e-92 lysm domain GPI-anchored protein 2 precursor (.1) Lus10014441 [exp] 417 / 5e-138 AT4G38380 501 / 2e-167 MATE efflux family protein (.1) Lus10022630 [exp] 336 / 7e-114 AT2G17120 255 / 1e-82 lysm domain GPI-anchored protein 2 precursor (.1) Lus10003326 [exp] 332 / 2e-112 AT2G17120 255 / 1e-82 lysm domain GPI-anchored protein 2 precursor (.1) Lus10042285 [exp] 194 / 1e-57 AT1G73470 152 / 8e-42 unknown protein Lus10014442 [exp] 146 / 9e-42 AT2G17120 223 / 2e-72 lysm domain GPI-anchored protein 2 precursor (.1) Lus10025643 [exp] 132 / 1e-34 AT1G21880 547 / 0.0 lysm domain GPI-anchored protein 1 precursor (.1.2) Lus10018191 [exp] 131 / 2e-34 AT1G21880 550 / 0.0 lysm domain GPI-anchored protein 1 precursor (.1.2) Lus10023946 [exp] 109 / 4e-29 AT2G17120 138 / 6e-41 lysm domain GPI-anchored protein 2 precursor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G183500 [exp] 311 / 4e-104 AT2G17120 318 / 3e-107 lysm domain GPI-anchored protein 2 precursor (.1) Potri.009G143300 [exp] 300 / 5e-100 AT2G17120 311 / 1e-104 lysm domain GPI-anchored protein 2 precursor (.1) Potri.005G176700 [exp] 128 / 3e-33 AT1G21880 548 / 0.0 lysm domain GPI-anchored protein 1 precursor (.1.2) Potri.002G084800 [exp] 125 / 3e-32 AT1G21880 554 / 0.0 lysm domain GPI-anchored protein 1 precursor (.1.2) Potri.015G085350 [exp] 57 / 5e-09 AT2G23770 125 / 7e-33 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.005G259600 [exp] 43 / 0.0004 AT2G33580 637 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0187 [flax] [poplar] LysM PF01476 [flax] [poplar] LysM LysM domain
Representative CDS sequence Show only first row Show all	>Lus10026372 pacid=23156573 polypeptide=Lus10026372 locus=Lus10026372.g ID=Lus10026372.BGIv1.0 annot-version=v1.0 ATGGACCGCCGTCAATCCCCCACTCTACTACTCTTCCTCCTCATCACAACAATCTCCACACTCCAAACTTCACCCACCGCCGCAGCAGACGATGACTACA CCTCCGATTTCCCTCCCAAATGCAACGCCTTACTCGACTACATCTCGCCGGAGAATGCCACAACCACATTCGCCTCCGTCCAGTCCGTCTACACAATCCG AGACATCCGCCTCCTCTTCGGAGCCAACAACCTCCCTTCTACGACGCCGCCCAACCAAACCATCCCGCCAAAACAGAGAATAAAAATCCCCTTCCCCTGC TTCAACCGCGGCGGCTACGGTGTGTCCGACCGGATTCCGATATACACCGTCAAGAAGGGCGACGTGCTGGATGACGTGGCGGCGAACGTGTTCGGCGGAG TGCTGACCGCCGACGACATTGTGTCTGTTAACAATGTTGCGGGTAAAGAACTGATCGAGGTCGGGGAGAGGTTGTGGGTTCCTCTGCCGTGCAGATGCGA TTACGTCGGGGGTGCTAAGGTGGTGCATTACGGACACTCGGTTGAAAATGGGAGCACCATGGATGGGATTGCTGCAAGGTTTGGGAGTAGCGTGGAGGTT TTGAATGGCCTTAATCGGTTGGATAACGGGTCGGTTTTGTTACCCGGTCAAGTTCTCGATGTTCCACTCAAAGCGTGTAGTTCGTCAATTCGACCCAATT CAGAAGACTGGCAAATGCTGTTACCTAACGGAACTTACACCTTCACAGCTAACGACTGTGTCCAATGCAGCTGTGATGCCTTGAACAATTGGACGCTACG GTGTCAGCCATCGGGGATTAAGCCATCAAACTGGTCAACTTGCCCTGCTACGCAGTGTAGAGGAGATAATACCATAATGTTAGGGAATTCCACCGCTTCG GATTGCGGAAGCGCCGCCACCTGCTCCTATGGTGGTTTCTCCTCCAACCAAACCATTTTCATCTTCCTTGACGACACCTGCCCTCCCGCTCCCTTCGGGG CCCCTTCCGCCGCTCCCTCCGTCAGCCCCTCAAATGGGAATTCAGGTGGGAGGGTGCCTGGTTCAAATTGGTGGAACTTGGGTTTGTTTGGGCTGGTTCA TTTGATGATTCTGCAGCTTTGTTTATGTCTTTGA
AA sequence Show only first row Show all	>Lus10026372 pacid=23156573 polypeptide=Lus10026372 locus=Lus10026372.g ID=Lus10026372.BGIv1.0 annot-version=v1.0 MDRRQSPTLLLFLLITTISTLQTSPTAAADDDYTSDFPPKCNALLDYISPENATTTFASVQSVYTIRDIRLLFGANNLPSTTPPNQTIPPKQRIKIPFPC FNRGGYGVSDRIPIYTVKKGDVLDDVAANVFGGVLTADDIVSVNNVAGKELIEVGERLWVPLPCRCDYVGGAKVVHYGHSVENGSTMDGIAARFGSSVEV LNGLNRLDNGSVLLPGQVLDVPLKACSSSIRPNSEDWQMLLPNGTYTFTANDCVQCSCDALNNWTLRCQPSGIKPSNWSTCPATQCRGDNTIMLGNSTAS DCGSAATCSYGGFSSNQTIFIFLDDTCPPAPFGAPSAAPSVSPSNGNSGGRVPGSNWWNLGLFGLVHLMILQLCLCL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17120		LYM2	lysm domain GPI-anchored prote...		Lus10026372 [exp]	0	1
AT1G47670			Transmembrane amino acid trans...		Lus10025113 [exp]	1.0	0.8449
AT5G25120		CYP71B11	"ytochrome p450, family 71, su...		Lus10013194 [exp]	4.2	0.8139
AT5G62480		GST14B, ATGSTU9	GLUTATHIONE S-TRANSFERASE 14B,...		Lus10023595 [exp]	5.9	0.7363
AT3G25810			Terpenoid cyclases/Protein pre...		Lus10001110 [exp]	8.0	0.7771
AT3G26770			NAD(P)-binding Rossmann-fold s...		Lus10016177 [exp]	9.0	0.7969
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10026237 [exp]	22.2	0.7147
AT3G48310		CYP71A22	"cytochrome P450, family 71, s...		Lus10027397 [exp]	29.9	0.6552
AT4G08180		ORP1C	OSBP(oxysterol binding protein...		Lus10035967 [exp]	30.9	0.7342
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036078 [exp]	30.9	0.6974
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10023079 [exp]	31.6	0.6819

Compare expression of checked genes

Lus10026372 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.