Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58610 179 / 6e-48 PHD finger transcription factor, putative (.1) AT1G05380 100 / 1e-21 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1.2) AT4G14920 97 / 8e-21 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT5G36740 96 / 1e-20 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT3G14980 96 / 2e-20 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT5G36670 95 / 4e-20 RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G27980 71 / 2e-12 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT2G37520 60 / 3e-09 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT3G53680 59 / 6e-09 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT2G36720 52 / 8e-07 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042283 [exp] 721 / 0 AT3G08590 993 / 0.0 2,3-biphosphoglycerate-independent phosphoglycerate mutase 2, Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (.1.2) Lus10015266 [exp] 283 / 3e-83 AT5G58610 558 / 7e-176 PHD finger transcription factor, putative (.1) Lus10025387 [exp] 219 / 1e-61 AT5G58610 428 / 5e-132 PHD finger transcription factor, putative (.1) Lus10025386 [exp] 177 / 2e-47 AT5G58610 271 / 4e-77 PHD finger transcription factor, putative (.1) Lus10012522 [exp] 140 / 2e-35 AT5G58610 285 / 4e-84 PHD finger transcription factor, putative (.1) Lus10007741 [exp] 121 / 1e-28 AT5G58610 323 / 4e-96 PHD finger transcription factor, putative (.1) Lus10018681 [exp] 121 / 1e-28 AT5G58610 308 / 1e-90 PHD finger transcription factor, putative (.1) Lus10006110 [exp] 100 / 6e-22 AT4G14920 868 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Lus10010562 [exp] 100 / 2e-21 AT4G14920 847 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G072600 [exp] 239 / 3e-68 AT5G58610 453 / 1e-139 PHD finger transcription factor, putative (.1) Potri.002G118600 [exp] 181 / 6e-49 AT5G58610 436 / 5e-137 PHD finger transcription factor, putative (.1) Potri.010G087700 [exp] 108 / 2e-24 AT4G14920 805 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.005G211100 [exp] 107 / 3e-24 AT5G36740 635 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.008G152600 [exp] 106 / 7e-24 AT4G14920 769 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.001G392801 [exp] 99 / 3e-21 AT3G14980 620 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.002G051400 [exp] 91 / 7e-19 AT5G36740 625 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.001G153200 [exp] 80 / 1e-15 AT1G05380 340 / 1e-104 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1.2) Potri.004G217600 [exp] 66 / 5e-11 AT2G27980 740 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.009G003900 [exp] 66 / 7e-11 AT2G27980 779 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026374 pacid=23156572 polypeptide=Lus10026374 locus=Lus10026374.g ID=Lus10026374.BGIv1.0 annot-version=v1.0 ATGGCGGCTATAATGCATTCAACCATACTTGACTGGGAGGTTAGAAGAGAGCAAGAAGGAGGAAACTATCAAATGCTGGTGAAAAGGGCAAGGAGTCACC TTGCAGCTGTGGGATGGAAGTTCGTTAGTATATTTTCCAATGGCAAAAGGGCCATGATACAAATATCACCAAATGGAAAGTCATACTATTCGCTTCGAAA GTCTTGCAAAGTATGCATGGAAAACAGTAGCATAGATGTTCCTTCTAAACCCACCAAACTGCACAATGTAGATATAAGAAGCACTCACGGAGTTGGTCTC CAACATCAAAGTTCTCAAAGTTTGAGGACTTCTGAAGGTCCCACTAAGCCGAAAAGTAATGGGGGAGTTGCTCAGCCGACACATATACCTCCTAGAGATA GAGTACTTAACAACATTCATGTGACTAAACCATCACACAGAAATCCTCGGACGGTGTTGTGTTGGCTGTTGGAGAACAATGTTGTATCGTCAAGGAAAAA AGTGTGCTACTATCGTAGTGCTACTTTGGGAGACAGTTCCACTGTAGAAGGACGCATAACTCGCGATGGCATCAAGTGCAGCTGTTGCAAGGACGTATAC TCTCTTAGTAAATTTCAAGAACACCTTGGTGGGAAATGTATCAGCAACTACAGTCGTGGACCGGCTTCCAACATATATCTGAAAGATGGAAGGTCTCTGC TAGATTGTCAGTTGCAAATAATGCATGATGCTAAGTTGAGAAGCTTGAGAACGGGAAAACAACCCGGGATGGTACAGGGAAAGAAGCTGCAGGGAGAGAA CGACTGTGTATGTTCAGTTTGTCGGTATGGAGGAGAACTTATTTTGTGTGATCTATGTCCATCCTCTTTCCATCAAAGTTGCCTAAAATTGGCGATATCC TGTTCTCTCGCTGCACTTCTAGGAAAATCAGTCCCAGTTGGTGTGGAGAATCTTACTTGGACCATGCTAAAACTTGTGGAGTTGGACAACACTAGATTTG GCGGTTTGAGTATCGAGATTCAGGCTCAGAGCTACAAAAAGCTCAATATTGCTCTTCAAGTCATGCAAGAGTGTTTCGATCCACTGGAAGAACCACACAC AAAGAGAGATATCATCAGAGATATTATTTTCAGCAAAAGAATTGAACTTTACTTGCTCGATGAACGGATTGGTGCTCAGATTCTTGAACCAGAAAGCTGT GCATTTAATTTGACCTCCCGTGGTTCAACTTCACAGATCAGAGCTGAGACGTCTGGACTTTTTGGGGAGAGGAAGTGGAAGTACCACTCATCGGGACAGG GCTTCAACATCGTCGTCATATTAATGAATGTGATTGAGAAGAAGCTCGTCGAGTTAGGAGTTCAACGGCTAGTTCTGCCTGCTGTTCCTAGCCTGTTGAA CTGGTTCTTTTGGCTTTCGAGAATGACAAAGGATGAAAGTGATGATGATGATCTCGGTTTATCAACTCCTGTCTCTGAAGTCCTTCAAGAAGATCACGCA GACAGAGAAGTAACCGAACATTTGGGGAAATGTGACTTCCGATCATCCGAGAAAGACGAGATCGGGTCCGGGTTTTTCAGGCTTTACCGAAACGCTTGA
AA sequence Show only first row Show all	>Lus10026374 pacid=23156572 polypeptide=Lus10026374 locus=Lus10026374.g ID=Lus10026374.BGIv1.0 annot-version=v1.0 MAAIMHSTILDWEVRREQEGGNYQMLVKRARSHLAAVGWKFVSIFSNGKRAMIQISPNGKSYYSLRKSCKVCMENSSIDVPSKPTKLHNVDIRSTHGVGL QHQSSQSLRTSEGPTKPKSNGGVAQPTHIPPRDRVLNNIHVTKPSHRNPRTVLCWLLENNVVSSRKKVCYYRSATLGDSSTVEGRITRDGIKCSCCKDVY SLSKFQEHLGGKCISNYSRGPASNIYLKDGRSLLDCQLQIMHDAKLRSLRTGKQPGMVQGKKLQGENDCVCSVCRYGGELILCDLCPSSFHQSCLKLAIS CSLAALLGKSVPVGVENLTWTMLKLVELDNTRFGGLSIEIQAQSYKKLNIALQVMQECFDPLEEPHTKRDIIRDIIFSKRIELYLLDERIGAQILEPESC AFNLTSRGSTSQIRAETSGLFGERKWKYHSSGQGFNIVVILMNVIEKKLVELGVQRLVLPAVPSLLNWFFWLSRMTKDESDDDDLGLSTPVSEVLQEDHA DREVTEHLGKCDFRSSEKDEIGSGFFRLYRNA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14980			Acyl-CoA N-acyltransferase wit...		Lus10026374 [exp]	0	1
AT5G14210			Leucine-rich repeat protein ki...		Lus10032059 [exp]	8.7	0.8149
AT5G43990		SDG18, SUVR2	SET DOMAIN PROTEIN 18, SET-dom...		Lus10022878 [exp]	11.8	0.7979
AT5G14210			Leucine-rich repeat protein ki...		Lus10032058 [exp]	12.7	0.8147
AT2G47240		CER8, LACS1	LONG-CHAIN ACYL-COA SYNTHASE 1...		Lus10002414 [exp]	12.7	0.8511
AT5G56850			unknown protein		Lus10032679 [exp]	15.2	0.8402
AT1G07080			Thioredoxin superfamily protei...		Lus10012503 [exp]	15.4	0.8571
AT5G02440			unknown protein		Lus10025345 [exp]	16.6	0.8001
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Lus10036865 [exp]	19.4	0.7879
AT5G43270	SBP	SPL2	squamosa promoter binding prot...		Lus10021614 [exp]	21.2	0.8393
AT4G28040			nodulin MtN21 /EamA-like trans...		Lus10019969 [exp]	29.9	0.7795

Compare expression of checked genes

Lus10026374 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.