Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42010 1127 / 0 PLDBETA1 phospholipase D beta 1 (.1) AT4G00240 1073 / 0 PLDBETA2 phospholipase D beta 2 (.1) AT4G11850 1069 / 0 PLDGAMMA1, MEE54 maternal effect embryo arrest 54, phospholipase D gamma 1 (.1) AT4G11840 1050 / 0 PLDGAMMA3 phospholipase D gamma 3 (.1) AT4G11830 1032 / 0 PLDGAMMA2 phospholipase D gamma 2 (.1.2) AT4G35790 783 / 0 ATPLDDELTA ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) AT3G15730 655 / 0 PLDALPHA1 phospholipase D alpha 1 (.1) AT1G52570 646 / 0 PLDALPHA2 phospholipase D alpha 2 (.1) AT5G25370 634 / 0 PLDALPHA3 phospholipase D alpha 3 (.1) AT1G55180 500 / 1e-165 PLDALPHA4, PLDEPSILON phospholipase D alpha 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042282 [exp] 1288 / 0 AT2G42010 940 / 0.0 phospholipase D beta 1 (.1) Lus10014146 [exp] 1237 / 0 AT2G42010 1254 / 0.0 phospholipase D beta 1 (.1) Lus10006718 [exp] 1231 / 0 AT2G42010 1264 / 0.0 phospholipase D beta 1 (.1) Lus10026377 [exp] 1180 / 0 AT2G42010 838 / 0.0 phospholipase D beta 1 (.1) Lus10006819 [exp] 1092 / 0 AT2G42010 1465 / 0.0 phospholipase D beta 1 (.1) Lus10005782 [exp] 1079 / 0 AT2G42010 1456 / 0.0 phospholipase D beta 1 (.1) Lus10001293 [exp] 822 / 0 AT4G35790 1071 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10012699 [exp] 820 / 0 AT4G35790 1075 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10041855 [exp] 769 / 0 AT4G35790 1280 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G112100 [exp] 1171 / 0 AT2G42010 1307 / 0.0 phospholipase D beta 1 (.1) Potri.014G074700 [exp] 1122 / 0 AT2G42010 1464 / 0.0 phospholipase D beta 1 (.1) Potri.002G152100 [exp] 1111 / 0 AT2G42010 1438 / 0.0 phospholipase D beta 1 (.1) Potri.002G016100 [exp] 845 / 0 AT4G35790 1194 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.005G246000 [exp] 843 / 0 AT4G35790 1170 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.003G015000 [exp] 825 / 0 AT4G35790 1088 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.007G060300 [exp] 793 / 0 AT4G35790 1281 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.005G105600 [exp] 786 / 0 AT4G35790 1289 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.001G193000 [exp] 650 / 0 AT1G52570 1412 / 0.0 phospholipase D alpha 2 (.1) Potri.003G032800 [exp] 647 / 0 AT3G15730 1419 / 0.0 phospholipase D alpha 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain CL0479 [flax] [poplar] PLD PF00614 [flax] [poplar] PLDc Phospholipase D Active site motif CL0479 [flax] [poplar] PF12357 [flax] [poplar] PLD_C Phospholipase D C terminal
Representative CDS sequence Show only first row Show all	>Lus10026375 pacid=23156451 polypeptide=Lus10026375 locus=Lus10026375.g ID=Lus10026375.BGIv1.0 annot-version=v1.0 ATGGGTCACACTCAAGTAATCGATCACTATAGCTCATTCGGAGGATCAGTCCATGGCCAAGGTCAAGAACCAATCCCATTCAACAATCAAGGTAAGAACT TTAAAATCCTTCTGTTACACGGATATCTGAACATCTGCGTAAAGCAGGCAGTAAACCTTCCAAACATGGACGCGCTCACCAAATCCTTCGGCCAAATGTT CTCCAAGCTCACCAACAAAATCGAAAGCAAGATCACCACATCCGACCCCTATGTAACCGTGTCTGTATCCGGAGCAGTCGTCGCGAGAACATTCGTGATA GAAAACAGCGAAAACCCCGTCTGGATGCAACATTTTAGTGTCTCAGTAGCGCATTATGCATCTGAGATTCACTTCATTGTGAAGGACAATGATATGGTTG GCTCCGAGGTTATAGGGGTTGTTGGGGTACCAGTTGAAGAGCTGGTTTTGAGGAAGAAGATTGAAGGGACTTTCCCTGTATTGGGTGCTAATGGCAACCA ATGTAGCGCTGGAGCTGGATTGAGCTTGTCAATTGAGTACAACCCAATTGATGGAATGGAGATTAACAATGCTAGTGGAGTTCTGGGGACTTACTTCCCT CTTCGAAAAGGCGGTAAGGTAACACTTTACCAAGATGCACATGTGGAGGAAGTTGATCCACATGGTGGTGGAATTGGGGGGTACGAGGGTCGGAGCTGCT GGAGTGATGTGTTTCGGGCTATTAGCGAGGCTCGCAGGCTGGTTTACATTACGGGCTGGTCTGTGAACTACAATGTTAGATTGGTTAGGAATGGAGGGAG GATGGATTGTACATTGGGGGAGCTTCTCAAGGCCAAGTCTCAAGAAGGTGTTAGGGTGTTGCTTCTTGTGTGGGATGATCCTACCTCGGGGAGCATTTTA GGCCACAAACATGACGGGATTATGAGCACGGGAGATGAAGAAACAAGGCGCTACTTCAAGAACTCTTCAGTCCAAGTGTTACTATGTCCAAGGTCTCCTG ACCAAGGACACGACACAGAAGTTGGAACAATCTACACCCACCATCAGAAAACAGTGATAGCAGATGCTGATGCAGGACGAAACAGAAGTAAGATCGTAGC TTTCGTCGGAGGCCTCGACTTGTGCAATGGCCGTTACGATACTCAAGAACATTCCCTCTTTAGGACATCAAACACAGTCCACAAAGATGACTTCCACAAC CCAACATTCGCAGTTCCAAGTTCTGGCTGTCCGAGGGAGCCATGGCACGACTTGCACAGCAAGATCGAAGGTCCAGCTGCATACGATGTCCTGACGAATT TCGAAGAGCGTTGGTCTAAAGCTTCGAAGCCTCGGGGGATTCATAAGCTGAAATCATCGTCACAAGATGATGCGTTGCTGAAGCTGGAAAGAATTCCTGA AATCCTTGGCATCTCAGAGGCTGCTGCTACTAGCCTGGCTGAAAATGATCCTGAAGCTTGGCATGTTCAAGTCTTTCGTTCGATTGATTCGACCTCTGTG AAAGGATTTCCCGATGATCCTAGACATGCAACAAGCAAGAACCTGCAGTGTGGGAAGAACATCCTGATAGACATGAGCATCCATGCAGCCTATGTGAATG CAATTCGATCCGCACAGCATTTTATCTACATTGAGAATCAGTACTTCCTTGGATCATCATACGCCTGGGATTCCTACAATAACTTGGGCGCCAACAACTT AATACCGATGGAAATCGCGCTCAAGATCGCTAGCAAAATCAGGGCAAACGAAAGGTTTGCAGCGTACATTCTCGTCCCCATGTGGCCAGAAGGTGTTCCT ACTGGCGCAGCCACACAACGGATACTGTTCTGGCAGCAAAAGACAATGCAAATGATGTATGAAACAATCTACAAGGTATTGGTGGAAGTTGGACTTGACA AGACGTACGAGCCACAAGATTACCTCAACTTCTTCTGCCTCGGAAACCGGGAGGAGGCGTCGACATTAGATCGAGAAGTTGCAGCTTATCCAGGAACAGC AACACCAAATACTCCTCAGGCGCTGAGTCAGAAGAACAGAAGGTTCATGATCTATGTACACTCGAAAGGGATGATAGTGGACGACCAATACGTAATAATA GGGTCTGCAAACATAAACCAAAGATCAATGGAAGGCACCCGCGACAGCGAGATCGCAATGGGTGCATTTCAGCCCCGGCACACCTTGGGAAGTTCCCACC AGCATCGTCCACACGGCCAGGTGTATGGGTACAGAAACTCACTGTGGGCCGAACACATAGGAAGTGTCGAAGGAAGTTTCGAAATGCCTGAGAGTGTGGA ATGTGTAAGAAGGGTGAGGAGCATTGGAGAAGAGAACTGGAAGCAATTTGCAGGAGAAACAGTGACAGAGATGAAAGGTCATCTGTTGAAGTATCCGGTT GAGGTTGATCGAATGGGGAAGGTCGGGCCGCTTCCGGGATGCTCGAGTTTCCCAGATGTTGGTGGCAATATTTTGGGATCGTACATACCTTTGCAGAAGA ACCTTAACATATGTGGTTCCTCCATAGCCATTCAGGAAAATGTTAATGCTTTTGGCTCCCTTCTTCCCAAACAAGAGAACCTCACCATTTGA
AA sequence Show only first row Show all	>Lus10026375 pacid=23156451 polypeptide=Lus10026375 locus=Lus10026375.g ID=Lus10026375.BGIv1.0 annot-version=v1.0 MGHTQVIDHYSSFGGSVHGQGQEPIPFNNQGKNFKILLLHGYLNICVKQAVNLPNMDALTKSFGQMFSKLTNKIESKITTSDPYVTVSVSGAVVARTFVI ENSENPVWMQHFSVSVAHYASEIHFIVKDNDMVGSEVIGVVGVPVEELVLRKKIEGTFPVLGANGNQCSAGAGLSLSIEYNPIDGMEINNASGVLGTYFP LRKGGKVTLYQDAHVEEVDPHGGGIGGYEGRSCWSDVFRAISEARRLVYITGWSVNYNVRLVRNGGRMDCTLGELLKAKSQEGVRVLLLVWDDPTSGSIL GHKHDGIMSTGDEETRRYFKNSSVQVLLCPRSPDQGHDTEVGTIYTHHQKTVIADADAGRNRSKIVAFVGGLDLCNGRYDTQEHSLFRTSNTVHKDDFHN PTFAVPSSGCPREPWHDLHSKIEGPAAYDVLTNFEERWSKASKPRGIHKLKSSSQDDALLKLERIPEILGISEAAATSLAENDPEAWHVQVFRSIDSTSV KGFPDDPRHATSKNLQCGKNILIDMSIHAAYVNAIRSAQHFIYIENQYFLGSSYAWDSYNNLGANNLIPMEIALKIASKIRANERFAAYILVPMWPEGVP TGAATQRILFWQQKTMQMMYETIYKVLVEVGLDKTYEPQDYLNFFCLGNREEASTLDREVAAYPGTATPNTPQALSQKNRRFMIYVHSKGMIVDDQYVII GSANINQRSMEGTRDSEIAMGAFQPRHTLGSSHQHRPHGQVYGYRNSLWAEHIGSVEGSFEMPESVECVRRVRSIGEENWKQFAGETVTEMKGHLLKYPV EVDRMGKVGPLPGCSSFPDVGGNILGSYIPLQKNLNICGSSIAIQENVNAFGSLLPKQENLTI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Lus10026375 [exp]	0	1
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Lus10026378 [exp]	3.9	0.7650
AT1G13510			Protein of unknown function (D...		Lus10031915 [exp]	11.0	0.6918
AT1G64970		VTE4, TMT1, G-T...	VITAMIN E DEFICIENT 4, gamma-t...		Lus10020357 [exp]	11.5	0.7239
					Lus10000811 [exp]	12.8	0.7578
AT5G13550		SULTR4;1	sulfate transporter 4.1 (.1)		Lus10040319 [exp]	18.0	0.7658
AT2G23200			Protein kinase superfamily pro...		Lus10010443 [exp]	18.7	0.6686
AT2G02500		MCT, ATMEPCT, I...	2-C-METHYL-D-ERYTHRITOL 4-PHOS...		Lus10026271 [exp]	22.2	0.7323
AT3G17980		AtC2	Arabidopsis thaliana C2 domain...		Lus10009684 [exp]	25.3	0.7160
AT4G37420			Domain of unknown function (DU...		Lus10030740 [exp]	26.6	0.7362
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10023016 [exp]	30.5	0.7545

Compare expression of checked genes

Lus10026375 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.