Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47340 139 / 2e-38 AT-ASN1, DIN6, ASN1 DARK INDUCIBLE 6, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, glutamine-dependent asparagine synthase 1 (.1.2.3) AT5G10240 115 / 5e-30 ASN3 asparagine synthetase 3 (.1.2) AT5G65010 113 / 3e-29 ASN2 asparagine synthetase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042281 [exp] 192 / 3e-58 AT3G47340 1068 / 0.0 DARK INDUCIBLE 6, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, glutamine-dependent asparagine synthase 1 (.1.2.3) Lus10031870 [exp] 144 / 3e-40 AT3G47340 1001 / 0.0 DARK INDUCIBLE 6, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, glutamine-dependent asparagine synthase 1 (.1.2.3) Lus10026379 [exp] 137 / 6e-40 AT3G17930 170 / 1e-52 unknown protein Lus10031300 [exp] 118 / 5e-33 AT5G65010 144 / 2e-40 asparagine synthetase 2 (.1.2) Lus10024052 [exp] 109 / 6e-28 AT5G10240 1013 / 0.0 asparagine synthetase 3 (.1.2) Lus10041698 [exp] 106 / 1e-26 AT5G10240 976 / 0.0 asparagine synthetase 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G072900 [exp] 139 / 9e-39 AT3G47340 1027 / 0.0 DARK INDUCIBLE 6, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, glutamine-dependent asparagine synthase 1 (.1.2.3) Potri.001G278400 [exp] 137 / 1e-37 AT3G47340 1018 / 0.0 DARK INDUCIBLE 6, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, glutamine-dependent asparagine synthase 1 (.1.2.3) Potri.005G075700 [exp] 115 / 8e-30 AT5G10240 1039 / 0.0 asparagine synthetase 3 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026376 pacid=23156507 polypeptide=Lus10026376 locus=Lus10026376.g ID=Lus10026376.BGIv1.0 annot-version=v1.0 ATGAGAAGAGGGAAGTTCCATGAAATGATCAGGCCACAGACGCAACCCCATTTGATTCATGCAAGGTTTGTAAATGGAGATAGAGAGGATTGTTACCACG TCGATGACAAATGTCCAAACCCGATGAAGAACCTTGCAAAACCAACGGGCGACTTGAACGCAGGGAATGAAAGGATTAAGCCTGAAGAAGGGAGGATAGA GAAATGGGTTCTTAGGAAAACATTTGATGACGAAGAACAACCCATATTTTGTACAGACAGAAAGAGCAATTTAGTGATGGTTGGCTACAGCTGGATTGAT GGCCTCAAAGCTCATGCTTGTCGACATAACCCGGCCAGTCTGACTGTTCCTGGAGGAGCAAGCGTGGCTTGCAGCACATCCAAAGCAGTCGAGTGGGATG CTTCATGGTCAGGCAATATAGACCCTTCTGGTAGAGCTGCATTGGGAGTTCATTTCTCGGCTTATACCGCTGCTGTGAGTTCCGGAATGGTGCCTCAGCC TAAGAGGATCAACAGCATGCAGCGAATGATGGAAGCTAGTCGCTATCCAGAGCTAATGCATGCCCCCCTGCTGCATAAAATATAA
AA sequence Show only first row Show all	>Lus10026376 pacid=23156507 polypeptide=Lus10026376 locus=Lus10026376.g ID=Lus10026376.BGIv1.0 annot-version=v1.0 MRRGKFHEMIRPQTQPHLIHARFVNGDREDCYHVDDKCPNPMKNLAKPTGDLNAGNERIKPEEGRIEKWVLRKTFDDEEQPIFCTDRKSNLVMVGYSWID GLKAHACRHNPASLTVPGGASVACSTSKAVEWDASWSGNIDPSGRAALGVHFSAYTAAVSSGMVPQPKRINSMQRMMEASRYPELMHAPLLHKI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47340		AT-ASN1, DIN6, ...	DARK INDUCIBLE 6, ARABIDOPSIS ...		Lus10026376 [exp]	0	1
AT2G45630			D-isomer specific 2-hydroxyaci...		Lus10011141 [exp]	1.4	0.8797
					Lus10016946 [exp]	1.4	0.8669
AT2G30600			BTB/POZ domain-containing prot...		Lus10016014 [exp]	2.2	0.8288
					Lus10011947 [exp]	7.2	0.8407
AT5G63180			Pectin lyase-like superfamily ...		Lus10014887 [exp]	12.5	0.8187
AT5G37990			S-adenosyl-L-methionine-depend...		Lus10028500 [exp]	13.1	0.8520
AT2G27550		ATC	centroradialis (.1)		Lus10043385 [exp]	14.2	0.8123
					Lus10040545 [exp]	24.5	0.7592
AT5G05970		NEDD1	NEURAL PRECURSOR CELL EXPRESSE...		Lus10040260 [exp]	31.2	0.7901
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10026807 [exp]	31.9	0.7256

Compare expression of checked genes

Lus10026376 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.