Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42010 837 / 0 PLDBETA1 phospholipase D beta 1 (.1) AT4G11850 810 / 0 PLDGAMMA1, MEE54 maternal effect embryo arrest 54, phospholipase D gamma 1 (.1) AT4G11840 802 / 0 PLDGAMMA3 phospholipase D gamma 3 (.1) AT4G00240 791 / 0 PLDBETA2 phospholipase D beta 2 (.1) AT4G11830 780 / 0 PLDGAMMA2 phospholipase D gamma 2 (.1.2) AT4G35790 581 / 0 ATPLDDELTA ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) AT3G15730 474 / 1e-157 PLDALPHA1 phospholipase D alpha 1 (.1) AT1G52570 471 / 3e-156 PLDALPHA2 phospholipase D alpha 2 (.1) AT5G25370 450 / 2e-148 PLDALPHA3 phospholipase D alpha 3 (.1) AT1G55180 370 / 3e-118 PLDALPHA4, PLDEPSILON phospholipase D alpha 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026375 [exp] 1201 / 0 AT2G42010 1154 / 0.0 phospholipase D beta 1 (.1) Lus10014146 [exp] 931 / 0 AT2G42010 1254 / 0.0 phospholipase D beta 1 (.1) Lus10006718 [exp] 929 / 0 AT2G42010 1264 / 0.0 phospholipase D beta 1 (.1) Lus10006819 [exp] 806 / 0 AT2G42010 1465 / 0.0 phospholipase D beta 1 (.1) Lus10005782 [exp] 803 / 0 AT2G42010 1456 / 0.0 phospholipase D beta 1 (.1) Lus10042282 [exp] 798 / 0 AT2G42010 940 / 0.0 phospholipase D beta 1 (.1) Lus10012699 [exp] 622 / 0 AT4G35790 1075 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10001293 [exp] 617 / 0 AT4G35790 1071 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10041855 [exp] 571 / 0 AT4G35790 1280 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G112100 [exp] 899 / 0 AT2G42010 1307 / 0.0 phospholipase D beta 1 (.1) Potri.014G074700 [exp] 840 / 0 AT2G42010 1464 / 0.0 phospholipase D beta 1 (.1) Potri.002G152100 [exp] 830 / 0 AT2G42010 1438 / 0.0 phospholipase D beta 1 (.1) Potri.003G015000 [exp] 630 / 0 AT4G35790 1088 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.005G246000 [exp] 628 / 0 AT4G35790 1170 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.002G016100 [exp] 627 / 0 AT4G35790 1194 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.007G060300 [exp] 597 / 0 AT4G35790 1281 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.005G105600 [exp] 585 / 0 AT4G35790 1289 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.001G193000 [exp] 467 / 4e-155 AT1G52570 1412 / 0.0 phospholipase D alpha 2 (.1) Potri.003G032800 [exp] 466 / 1e-154 AT3G15730 1419 / 0.0 phospholipase D alpha 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain CL0479 [flax] [poplar] PLD PF00614 [flax] [poplar] PLDc Phospholipase D Active site motif
Representative CDS sequence Show only first row Show all	>Lus10026377 pacid=23156628 polypeptide=Lus10026377 locus=Lus10026377.g ID=Lus10026377.BGIv1.0 annot-version=v1.0 ATGGGTCACCATACTCAAGTAATCGATCACTGGAGCTCATTCGGAGGGTCAGTCCATGGCCAAGGTCAAGAACCAATCCCATTCAACAATCAAGGTAAGG ACTTTAAAGTCCTTCTCTTACACGGATATCTGAACATCTGCGTAAAGCAGGCAGTAAACCTTCCAAACATGGACGCCCTCACCAAATCCCTCGGCCAAAT GTTCTCCAAGCTCACCCAAAAAATCGAAAGCAAAATCAACACATCCGACCCTTATGTTACGGTGTCCGTATCCGGAGCAGTCGTCGCTAGAACATTCGTG ATAAAAAACAACGAAAACCCGGCCTGGATGCAGCATTTCTCCAACGTGCCAGTGGCGCATTACGCCTCCGAGATTCACTTCATTGTGAAGGACCATGACT TGGTTGGCTCCGAGGTTATAGGGGCCGTTGGGGTACCAGTTGAAGATCTGGTTTTGAGGAAGAAAATTGAAGGGACTTTTCCTGTATTGGGTGCTAATGG CAGCCAATGTAGAAATGGAGCTGGATTGAGCTTGTCAATTGAGTACAATCCAATTGATGGAATGGAGATTGACAATGTTGGTGGTGTTCCAGGGACTTAC TTCCCTCTTCGAAAAGGCGGTAAGGTAACACTTTACCAAGATGCACATGTGGAGGAAATTGGTCAAATTGGGGGGTTCGAGCATCGGAGCTGCTGGAGTG ATGTGTTTCAGGCTATTAGCGAGGCTCGTAGGCTGGTTTACATTACGGGTTGGTCTGTGAATTGCAATGTTAGATTGGTAAGGAATGGAGGGAGGATGGA TTGTACATTGGGGGAGCTTCTCAAGGCTAAGTCTCAAGAAGGTGTTAGGGTGTTGCTTCTTGTGTGGGATGATCCTACTTCTAGCAGGATTTTAAGCCAC AAATATGATGGGATGATGAGCACAGGAGATGAAGAAACAAGGCGCTACTTCAAGAACTCTTCAGTCCAAGAAGTTCGAACAATCTATACCCACCATCAGA AAACAGTGATAGCAGACGCTGATGCAGGGCGAAACAGAAGGAAGATCATAGCTTTTGTTGGAGGCCTCGACTTGTGCAATGGCCGTTACGATACTCAAGA GCACTCCCTCTTTAGGACATCACACACAGTCCACAAGGACGACTTCCACAACCCAACTTTGGCAGCGCCAACAACTGCTGGAAGCTGTCCGAGGCAGCCA TGGCACGACTTGCACAGCAAGATCGAAGGTCCAGCTGCGTACGATGTCCTGACGAATTTTGAAGAGCGTTGGTCTAAAGCTTCAAAGCCTCGAGGAATTC ACAAGCTGAGATCATCATCACAAGATGATGCATTGCTGAAGCTGGAAAGAATTCCTGAAATCCTTGGCTTCTCAGAGGCTGCTGCTACTAGCCTGGCTGA AAATGATCCTGAAGCTTGGCATGTTCAGGTCTTTCGTTCGATTGATTCGACCTCTGTGAAAGGATTTCCTGATGATCCTGGACATTGCAACAAGCAAGAC ATGAGCATCCATGCAGCCTATGTGAATGCAATTCGATCCGCGCAGCATTTTATCTACATTGAGAATCAGTACTTCCTTGGATCATCATACGCCTGGGATT CCTACAATAACTTGGGCGCCAACAACTTAATACCGATGGAAATCGCGCTCAAGATCGCTAGCAAAATCAGGGCAAACGAAAGGTTTGCAGCGTACATTCT CGTCCCCATGTGGCCAGAAGGTGTTCCTACTGGCGCAGCCACACAACGGATACTGTTCTGGCAGCAAAAGACAATGCAAATGATGTATGAAACAATCTAC AAGGTATTGGTGGAAGTTGGACTTGACAAGACGTACGAGCCACAAGATTACCTCAACTTCTTCTGCCTCGGAAACCGGGAGGAGGCATCGACATTAGATC GAGAAGTTGCAGCTTATCCAAGAACAGCAACACCAAATACTCCTCAGGCCGCTTATTTCGAAAATAATTTCAAGCATTGA
AA sequence Show only first row Show all	>Lus10026377 pacid=23156628 polypeptide=Lus10026377 locus=Lus10026377.g ID=Lus10026377.BGIv1.0 annot-version=v1.0 MGHHTQVIDHWSSFGGSVHGQGQEPIPFNNQGKDFKVLLLHGYLNICVKQAVNLPNMDALTKSLGQMFSKLTQKIESKINTSDPYVTVSVSGAVVARTFV IKNNENPAWMQHFSNVPVAHYASEIHFIVKDHDLVGSEVIGAVGVPVEDLVLRKKIEGTFPVLGANGSQCRNGAGLSLSIEYNPIDGMEIDNVGGVPGTY FPLRKGGKVTLYQDAHVEEIGQIGGFEHRSCWSDVFQAISEARRLVYITGWSVNCNVRLVRNGGRMDCTLGELLKAKSQEGVRVLLLVWDDPTSSRILSH KYDGMMSTGDEETRRYFKNSSVQEVRTIYTHHQKTVIADADAGRNRRKIIAFVGGLDLCNGRYDTQEHSLFRTSHTVHKDDFHNPTLAAPTTAGSCPRQP WHDLHSKIEGPAAYDVLTNFEERWSKASKPRGIHKLRSSSQDDALLKLERIPEILGFSEAAATSLAENDPEAWHVQVFRSIDSTSVKGFPDDPGHCNKQD MSIHAAYVNAIRSAQHFIYIENQYFLGSSYAWDSYNNLGANNLIPMEIALKIASKIRANERFAAYILVPMWPEGVPTGAATQRILFWQQKTMQMMYETIY KVLVEVGLDKTYEPQDYLNFFCLGNREEASTLDREVAAYPRTATPNTPQAAYFENNFKH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Lus10026377 [exp]	0	1
AT4G00730	HD	AHDP, ANL2	ANTHOCYANINLESS 2, ARABIDOPSIS...		Lus10003299 [exp]	3.6	0.7890
AT4G10940			RING/U-box protein (.1)		Lus10001535 [exp]	7.2	0.7837
AT1G60990			Glycine cleavage T-protein fam...		Lus10020818 [exp]	7.5	0.7784
AT5G08300			Succinyl-CoA ligase, alpha sub...		Lus10010186 [exp]	10.2	0.7496
AT1G27180			disease resistance protein (TI...		Lus10040576 [exp]	11.0	0.7697
AT1G52950			Nucleic acid-binding, OB-fold-...		Lus10003298 [exp]	11.2	0.7048
AT1G30370		DLAH	DAD1-like acylhydrolase, alpha...		Lus10023281 [exp]	11.9	0.7836
AT3G55620		eIF6A, EMB1624	embryo defective 1624, eukaryo...		Lus10038669 [exp]	14.0	0.6346
AT5G61380		AtTOC1, TOC1, A...	PSEUDO-RESPONSE REGULATOR 1, T...		Lus10000566 [exp]	16.4	0.7596
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Lus10026876 [exp]	20.4	0.7409

Compare expression of checked genes

Lus10026377 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.