Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42010 190 / 1e-56 PLDBETA1 phospholipase D beta 1 (.1) AT4G11850 181 / 8e-54 PLDGAMMA1, MEE54 maternal effect embryo arrest 54, phospholipase D gamma 1 (.1) AT4G00240 179 / 6e-53 PLDBETA2 phospholipase D beta 2 (.1) AT4G11830 177 / 2e-52 PLDGAMMA2 phospholipase D gamma 2 (.1.2) AT4G11840 173 / 6e-51 PLDGAMMA3 phospholipase D gamma 3 (.1) AT4G35790 147 / 1e-41 ATPLDDELTA ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) AT1G52570 109 / 2e-28 PLDALPHA2 phospholipase D alpha 2 (.1) AT5G25370 108 / 8e-28 PLDALPHA3 phospholipase D alpha 3 (.1) AT3G15730 108 / 8e-28 PLDALPHA1 phospholipase D alpha 1 (.1) AT1G55180 76 / 2e-16 PLDALPHA4, PLDEPSILON phospholipase D alpha 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026375 [exp] 311 / 6e-102 AT2G42010 1154 / 0.0 phospholipase D beta 1 (.1) Lus10042282 [exp] 288 / 1e-94 AT2G42010 940 / 0.0 phospholipase D beta 1 (.1) Lus10014146 [exp] 209 / 6e-64 AT2G42010 1254 / 0.0 phospholipase D beta 1 (.1) Lus10006718 [exp] 206 / 2e-62 AT2G42010 1264 / 0.0 phospholipase D beta 1 (.1) Lus10006819 [exp] 191 / 7e-57 AT2G42010 1465 / 0.0 phospholipase D beta 1 (.1) Lus10005782 [exp] 184 / 2e-54 AT2G42010 1456 / 0.0 phospholipase D beta 1 (.1) Lus10004156 [exp] 154 / 7e-44 AT4G35790 1079 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10028401 [exp] 150 / 6e-43 AT4G35790 1050 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10005627 [exp] 150 / 8e-43 AT4G35790 969 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G112100 [exp] 196 / 6e-59 AT2G42010 1307 / 0.0 phospholipase D beta 1 (.1) Potri.002G152100 [exp] 191 / 7e-57 AT2G42010 1438 / 0.0 phospholipase D beta 1 (.1) Potri.014G074700 [exp] 187 / 2e-55 AT2G42010 1464 / 0.0 phospholipase D beta 1 (.1) Potri.004G218900 [exp] 150 / 2e-47 AT4G11850 201 / 6e-61 maternal effect embryo arrest 54, phospholipase D gamma 1 (.1) Potri.002G016100 [exp] 157 / 2e-45 AT4G35790 1194 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.005G246000 [exp] 156 / 1e-44 AT4G35790 1170 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.007G060300 [exp] 147 / 8e-42 AT4G35790 1281 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.005G105600 [exp] 144 / 1e-40 AT4G35790 1289 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.003G015000 [exp] 144 / 1e-40 AT4G35790 1088 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.006G253900 [exp] 125 / 8e-34 AT3G15730 1144 / 0.0 phospholipase D alpha 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12357 [flax] [poplar] PLD_C Phospholipase D C terminal
Representative CDS sequence Show only first row Show all	>Lus10026378 pacid=23156394 polypeptide=Lus10026378 locus=Lus10026378.g ID=Lus10026378.BGIv1.0 annot-version=v1.0 ATGGAAGGCACCCGCGACAGCGAGATCGCAATGGGTGCATTTCAGCCCCGGCACACCTTGGGAAGTTCCAACCAGCATCGTCCACACGGCCAGGTGTATG GGTACAGAAACTCACTGTGGGCCGAACACATAGGAAGTGTCGAAGGAAGTTTCGAAATGCCGGAGAGTGTGGAATGTGTAAGAAGGGTGAGGTGCATTGG AGAAGAGAATTGGAAGCAATTTGCAGGAGAAACAGTGACAGAGATGAAAGGTCATCTGCTGAAGTATCCGGTTGAGGTTGATCGAATGGGGAAGGTCGGG CCGCTTCCGGGATGCTCGAGTTTCCCAGATGTTGGTGGCAATATTTTGGGATCGTTCATACCTTTGCAGAAGAACCTTAACATATGTGGTTCCTCCATAC CCATTCAGGAAATTGTTAATGCGTTTGGCTCCCATCTTCCCAAACAAGAGAACCTCACCATTTGA
AA sequence Show only first row Show all	>Lus10026378 pacid=23156394 polypeptide=Lus10026378 locus=Lus10026378.g ID=Lus10026378.BGIv1.0 annot-version=v1.0 MEGTRDSEIAMGAFQPRHTLGSSNQHRPHGQVYGYRNSLWAEHIGSVEGSFEMPESVECVRRVRCIGEENWKQFAGETVTEMKGHLLKYPVEVDRMGKVG PLPGCSSFPDVGGNILGSFIPLQKNLNICGSSIPIQEIVNAFGSHLPKQENLTI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Lus10026378 [exp]	0	1
AT4G00330		CRCK2	calmodulin-binding receptor-li...		Lus10018828 [exp]	2.4	0.8083
AT1G69550			disease resistance protein (TI...		Lus10018308 [exp]	2.8	0.8054
AT1G13510			Protein of unknown function (D...		Lus10031915 [exp]	3.2	0.7461
AT1G27170			transmembrane receptors;ATP bi...		Lus10020537 [exp]	3.5	0.7754
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Lus10026375 [exp]	3.9	0.7650
AT5G02800		CDL1	CDG1-like 1, Protein kinase su...		Lus10015050 [exp]	6.8	0.6945
AT1G27170			transmembrane receptors;ATP bi...		Lus10020536 [exp]	8.5	0.7650
AT5G03795			Exostosin family protein (.1)		Lus10039142 [exp]	13.4	0.7028
AT1G27170			transmembrane receptors;ATP bi...		Lus10020524 [exp]	15.0	0.7667
AT1G27680		APL2	ADPGLC-PPase large subunit (.1...		Lus10007209 [exp]	19.4	0.7059

Compare expression of checked genes

Lus10026378 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.