Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17930 123 / 1e-34 unknown protein AT3G47340 92 / 9e-21 AT-ASN1, DIN6, ASN1 DARK INDUCIBLE 6, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, glutamine-dependent asparagine synthase 1 (.1.2.3) AT5G10240 73 / 2e-14 ASN3 asparagine synthetase 3 (.1.2) AT5G65010 66 / 4e-12 ASN2 asparagine synthetase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042280 [exp] 159 / 1e-49 AT3G17930 129 / 3e-39 unknown protein Lus10026376 [exp] 150 / 5e-45 AT3G47340 138 / 3e-38 DARK INDUCIBLE 6, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, glutamine-dependent asparagine synthase 1 (.1.2.3) Lus10042281 [exp] 133 / 2e-35 AT3G47340 1068 / 0.0 DARK INDUCIBLE 6, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, glutamine-dependent asparagine synthase 1 (.1.2.3) Lus10031870 [exp] 96 / 3e-22 AT3G47340 1001 / 0.0 DARK INDUCIBLE 6, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, glutamine-dependent asparagine synthase 1 (.1.2.3) Lus10031300 [exp] 92 / 7e-22 AT5G65010 144 / 2e-40 asparagine synthetase 2 (.1.2) Lus10024052 [exp] 69 / 5e-13 AT5G10240 1013 / 0.0 asparagine synthetase 3 (.1.2) Lus10041698 [exp] 69 / 6e-13 AT5G10240 976 / 0.0 asparagine synthetase 3 (.1.2) Lus10042279 [exp] 0 / 1 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G036500 [exp] 122 / 6e-34 AT3G17930 97 / 4e-25 unknown protein Potri.001G278400 [exp] 99 / 2e-23 AT3G47340 1018 / 0.0 DARK INDUCIBLE 6, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, glutamine-dependent asparagine synthase 1 (.1.2.3) Potri.009G072900 [exp] 97 / 1e-22 AT3G47340 1027 / 0.0 DARK INDUCIBLE 6, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, glutamine-dependent asparagine synthase 1 (.1.2.3) Potri.005G075700 [exp] 73 / 2e-14 AT5G10240 1039 / 0.0 asparagine synthetase 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11460 [flax] [poplar] DUF3007 Protein of unknown function (DUF3007)
Representative CDS sequence Show only first row Show all	>Lus10026379 pacid=23156516 polypeptide=Lus10026379 locus=Lus10026379.g ID=Lus10026379.BGIv1.0 annot-version=v1.0 ATGGCTGCTCCCCTCCCAAAGTTTCCAACTTCATGCATTTCACGCCAAGCCAGAGCTATTCCTTCTCTGGGTACTTCAGCTTCGTCATGCTCTCAACTGG GCTCAACAGTCTGCAGCGTTTTCACAATAGATTGGTTGCACATGATAGACAGGAAGCTAAGCTCTCTTCGAGGAGGCAAAGATCCACCTTCTTGGTTTCT GCTTCTCAGAGTGGTTCCTCCTCCAGTGATGGGGATGACTCCATTTGGGTACACCAGGAAGGACGTTATACTGATCGGAGTTGGACTCACTCTTCTTGGC TATGGCATGAAAAGTGGACTAGAGTTCATTGGATTGGACAGCTTCCAAGCAGGGAATATTGTTGAAGTAGTACTGGTTTTGGGGCTAACTGTTGGATGGA TATACACCTATCTCTTTAGAGTCTCCAACAAGGAAATGACTTATGCTCAGCAGCTACGCGACTATGAGTACAAAGTCATGGAGAAACGGTTTGAAAGCTT GACAGAAGCAGAGATAGCAGCATTGATGGAACAAGTTGAAGAAGAGAAGAGGCGCATTGGTGACAAGGACAATAAGAACTCGGCCAGTTTGACTGTTGCC GGAGGAGCAAGCGTGGCGTGCAGCACGGCCAAAGCTGTGGAATGGGATGCTTCAGGGTCAGGCAATATGGACCCTTCCGGTAGAGCTGCATTGGAAGTTC ATCTCTCGGCTTATGCTGCAGCCGCGAGTTCCGGAATGGTGCCTCAGCCGAAGAGGATCAACAGCATGCCGCGAATGATGGAAGCTAGTCGCTATCCAGA GCTAATGCATGCCCCCCTGCTGCATAAAATATAA
AA sequence Show only first row Show all	>Lus10026379 pacid=23156516 polypeptide=Lus10026379 locus=Lus10026379.g ID=Lus10026379.BGIv1.0 annot-version=v1.0 MAAPLPKFPTSCISRQARAIPSLGTSASSCSQLGSTVCSVFTIDWLHMIDRKLSSLRGGKDPPSWFLLLRVVPPPVMGMTPFGYTRKDVILIGVGLTLLG YGMKSGLEFIGLDSFQAGNIVEVVLVLGLTVGWIYTYLFRVSNKEMTYAQQLRDYEYKVMEKRFESLTEAEIAALMEQVEEEKRRIGDKDNKNSASLTVA GGASVACSTAKAVEWDASGSGNMDPSGRAALEVHLSAYAAAASSGMVPQPKRINSMPRMMEASRYPELMHAPLLHKI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17930			unknown protein		Lus10026379 [exp]	0	1
AT1G70760		NdhL, CRR23	NADH dehydrogenase-like comple...		Lus10030538 [exp]	2.2	0.9601
AT2G39420			alpha/beta-Hydrolases superfam...		Lus10003304 [exp]	3.5	0.9417
AT2G03420			unknown protein		Lus10036810 [exp]	3.5	0.9468
AT4G12830			alpha/beta-Hydrolases superfam...		Lus10002142 [exp]	3.7	0.9505
AT1G70760		NdhL, CRR23	NADH dehydrogenase-like comple...		Lus10012887 [exp]	3.9	0.9479
AT3G61080			Protein kinase superfamily pro...		Lus10036555 [exp]	6.2	0.9141
AT1G74410			RING/U-box superfamily protein...		Lus10001654 [exp]	6.9	0.9358
AT3G17930			unknown protein		Lus10042280 [exp]	7.5	0.9297
AT1G12250			Pentapeptide repeat-containing...		Lus10032239 [exp]	9.2	0.9466
AT1G08540		ATSIG1, SIG1, S...	SIGMA FACTOR B, RNA POLYMERASE...		Lus10013642 [exp]	10.6	0.9389

Compare expression of checked genes

Lus10026379 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.