Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07110 1069 / 0 FKFBP, ATF2KP, F2KP "fructose-2,6-bisphosphatase", fructose-2,6-bisphosphatase (.1) AT3G30200 101 / 3e-22 Plant transposase (Ptta/En/Spm family) (.1) AT5G05280 75 / 3e-15 RING/U-box superfamily protein (.1) AT5G58580 76 / 1e-14 ATL63 TOXICOS EN LEVADURA 63 (.1) AT4G15975 74 / 2e-14 RING/U-box superfamily protein (.1) AT3G10910 73 / 2e-14 RING/U-box superfamily protein (.1) AT3G16720 75 / 3e-14 ATL2 TOXICOS EN LEVADURA 2 (.1) AT2G17450 71 / 8e-14 RHA3A RING-H2 finger A3A (.1) AT1G76410 70 / 2e-13 ATL8 RING/U-box superfamily protein (.1) AT5G01880 69 / 2e-13 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042278 [exp] 1434 / 0 AT1G07110 1122 / 0.0 "fructose-2,6-bisphosphatase", fructose-2,6-bisphosphatase (.1) Lus10031299 [exp] 1187 / 0 AT1G07110 1128 / 0.0 "fructose-2,6-bisphosphatase", fructose-2,6-bisphosphatase (.1) Lus10031298 [exp] 1186 / 0 AT1G07110 1129 / 0.0 "fructose-2,6-bisphosphatase", fructose-2,6-bisphosphatase (.1) Lus10031869 [exp] 1155 / 0 AT1G07110 1097 / 0.0 "fructose-2,6-bisphosphatase", fructose-2,6-bisphosphatase (.1) Lus10042277 [exp] 132 / 2e-34 AT3G16720 104 / 2e-26 TOXICOS EN LEVADURA 2 (.1) Lus10029037 [exp] 72 / 3e-14 AT3G10910 166 / 9e-53 RING/U-box superfamily protein (.1) Lus10020859 [exp] 73 / 9e-14 AT1G49230 230 / 3e-76 RING/U-box superfamily protein (.1) Lus10033515 [exp] 73 / 9e-14 AT1G49230 224 / 6e-74 RING/U-box superfamily protein (.1) Lus10013210 [exp] 71 / 2e-13 AT1G20823 207 / 3e-68 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G073800 [exp] 1192 / 0 AT1G07110 1170 / 0.0 "fructose-2,6-bisphosphatase", fructose-2,6-bisphosphatase (.1) Potri.001G279100 [exp] 1192 / 0 AT1G07110 1161 / 0.0 "fructose-2,6-bisphosphatase", fructose-2,6-bisphosphatase (.1) Potri.001G279200 [exp] 82 / 7e-17 AT5G58580 101 / 4e-25 TOXICOS EN LEVADURA 63 (.1) Potri.009G073900 [exp] 81 / 1e-16 AT5G58580 102 / 9e-26 TOXICOS EN LEVADURA 63 (.1) Potri.010G010500 [exp] 77 / 6e-15 AT3G16720 202 / 1e-63 TOXICOS EN LEVADURA 2 (.1) Potri.001G309600 [exp] 74 / 1e-14 AT1G49230 261 / 6e-89 RING/U-box superfamily protein (.1) Potri.013G091300 [exp] 72 / 3e-14 AT3G10910 153 / 2e-47 RING/U-box superfamily protein (.1) Potri.003G075200 [exp] 71 / 7e-14 AT5G05280 137 / 2e-41 RING/U-box superfamily protein (.1) Potri.019G010500 [exp] 72 / 1e-13 AT1G49230 260 / 2e-88 RING/U-box superfamily protein (.1) Potri.019G057700 [exp] 70 / 2e-13 AT3G10910 157 / 6e-49 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF01591 [flax] [poplar] 6PF2K 6-phosphofructo-2-kinase CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger) CL0071 [flax] [poplar] His_phosphatase PF00300 [flax] [poplar] His_Phos_1 Histidine phosphatase superfamily (branch 1) CL0369 [flax] [poplar] GHD PF00686 [flax] [poplar] CBM_20 Starch binding domain
Representative CDS sequence Show only first row Show all	>Lus10026380 pacid=23156482 polypeptide=Lus10026380 locus=Lus10026380.g ID=Lus10026380.BGIv1.0 annot-version=v1.0 ATGGGGACGGGAACGTCCAAGGATGCCTCAGACGGCGTATCACACGACGACGGATGTCTCGACGTCCTCGCCGGCGGCCAGCTGTTTGTCTCTCTGAAAA TGGAGAATTTCAATCCTAATGGCGAGATTATCCCTCATGTCTACGGCTCTGCTCGTATTATCGGCTCTTGGGACCCTTCTAAAGCTCTATCCATGGAGCG GGAATCGGCTTCAATGTGGGAGCTCAGCTTCGTTGTTCCTCCTAATCACGAAACTCTGGATTTCAAGTTCATTCTGAAACCGAAGTACGGCCCAGCTCCT TGTGTGATCGAGGAGGGTCCAAACCGGCTTCTCTCAAGGGGTGCATTGCAAGGAGAATCAAGGCTGGCGATCTTTAGGAATGGTGATGATATTTTGGAAT ATAGAGTTTTGATAAAGGCCGATCAAGTTTCTCCCTTCGATCTCGCGGCTAGTTGGAGGGCATACCAGGAGAACTTTCGACCTTCGACTGTTCGTGGGAT TCCTGATGTTACTATCAATTCTGAACCAAGTGAAGGAGCCGAGAATGGATCTCCTGCTAGCTTGGAGCTTGATCTTGAACGCTATGTAGTTCCAGCTCCA TCAACCTCTGCAAACTCAGGGTCAGTTTATGCAGCTAACAATGCAGAGAATCCAAGGTTCAGAACTACTGATGTGTCGTGGTATAATTCTCAACCGAACA AGGATGCTGCGGTTTCCTCTGATCTGAGTACAGCTTTTAAGGGCATTGAGGTTGTCATCCCAGATCCTCCCAGAGTGCATCCTGGTACTGAAATGCTGGA TTCAAAGTCACTGGGCACTGTTTCACCCCTGCAAAAGCAAGATAGCCAGAGAGGTGTATTTGTGGACCGAGGTGTTGGATCTCCTAGACTGGTTAAATCA CCAAGTACGAGAACATATACATTTGATCTTAAACAGGATGCAGAAACCAAGCACTCAATGCCAGCAGCTGCCGGAGCTGTTTTCGCTGCTGCTGTAGCAG ACCAGATGCTTGGTCCTAAGGAAGACAGACATTTAGCAATCGTTCTGGTCGGTCTTCCAGCTCGGGGAAAAACTTTCACTGCAGCTAAACTTACTCGTTA TCTTCGGTGGTTGGGTCATGATACCAAACATTTCAATGTTGGCAAGTACCGACGTCTTAAGCATGGAGTTAATCAGTGTGCTGACTTTTTCCGAGGAGAC AACTCTGAAGGTGTAGAAGCACGTAATGAGGTAGCAGCTCTTGCAATGGAAGACATGATTGCCTGGATGCAAGAGGGTGGGCAGGTAGGAATATTTGATG CCACAAATAGTACCAGGCAAAGAAGGAACATGCTGATGAAAATGGCTGAAGGGAAATGCAAGATTATATTCTTGGAAACTTTATGCAATGATAGACGCAT TATTGAGAGGAACATACGACTTAAAATCCAGCAAAGTCCAGACTATGCAGAACAGCCGGATTTTGAAGCTGGATATGAAGACTTCAAAAGTAGGCTGGAA AATTATGAAAAGGTCTACGAGCCGGTTGAAGAAGGTTCATACATTAAGATGATAGACATGGTCACTGGTAAAGGTGGGCAAATTCAGGTTAACAATATAA GTGGCTACCTTCCTGGGCGCATTGTTTTCTTCCTGGTGAATACTCATCTTACTCCGCGCCCAATTTTACTTACGAGGCATGGAGAAAGTCAGGACAACTT AAGAGGCCGAATCGGAGGTGATTCTTTATTGAGTGATTCTGGAGAAATATATGCCAAGAAGCTTTCCAACTTTGTCGAGAAACGTCTAAAATCTGAGAAA GCGGCTTCTATTTGGACTAGCACATTGCAGAGGACGATCCTCACAGCTGATCCACTTGCTGAATTTCCTAAGGTCCAATGGCGTGCCCTGGATGAGATCA ACGCTGGAGTGTGTGATGGAATGACATACGAGGAAATAAAGAAGAACATGCCGGAGGAGTACGAGTCCCGTAAGAAGGATAAGCTAAGATACAGGTATCC TCGTGGAGAATCGTATCTGGACGTCATCCAGAGGCTGGAGCCAGTAATCATTGAACTGGAGAGACAAAGAGCACCTGTTGTAGTTATCTCCCACCAGGCA GTCTTGAGGGCTCTGTATGCTTATTTTGCTGATAGACCCCTAAAAGAAATTCCACACATAGAGCATATCCTCCTCTTCTTCTTCCTACGACAGCAGCGGC AACCTCCTTCTGGCTGCATTCATCTCCCTCCTATTGGTAATCCTCTTCGTCCTCCTCCTCCACATCTACGCCAAATGGTACCTCTCCCGCCGCATGAGGA CCACCACTGTCATCACCTCCTCCCCCACCCCCCACCCTATGGAGGTAGTGAAATTAGTTGGCTGCCGGACGGTGAGGAGAGCAAGAATAAGACGGGGGGC GTTGTGGGGCAGCGGCATCACCATCATCATAATCAGTGTGTGATTTGCTTGAGTGGGTTTGGGGATGGTGAAGTTGGGAGGTGTCTGAGTGGTTGTGGAC ATGGGTTTCACGTTGAGTGTATAGATATGTGGCTTCTTTCACACTCCAGCTGTCCCATCTGTAGATCCCCTGCCGCTCCCCTGCCTCTTCCTCTGCCTCC CGGCGCCGCAGTAGATAGTAAGGCTGCCGGCACCGAGGAAGAGGAGGAGGTTGCGGTGTTGATTAGTAGCGCTAGTGGACGGTCCTCGTCGGAGGCTGAT GAGGATGATCATCGTCATCATCATGACAATGTACAATGTGTCTCTTAG
AA sequence Show only first row Show all	>Lus10026380 pacid=23156482 polypeptide=Lus10026380 locus=Lus10026380.g ID=Lus10026380.BGIv1.0 annot-version=v1.0 MGTGTSKDASDGVSHDDGCLDVLAGGQLFVSLKMENFNPNGEIIPHVYGSARIIGSWDPSKALSMERESASMWELSFVVPPNHETLDFKFILKPKYGPAP CVIEEGPNRLLSRGALQGESRLAIFRNGDDILEYRVLIKADQVSPFDLAASWRAYQENFRPSTVRGIPDVTINSEPSEGAENGSPASLELDLERYVVPAP STSANSGSVYAANNAENPRFRTTDVSWYNSQPNKDAAVSSDLSTAFKGIEVVIPDPPRVHPGTEMLDSKSLGTVSPLQKQDSQRGVFVDRGVGSPRLVKS PSTRTYTFDLKQDAETKHSMPAAAGAVFAAAVADQMLGPKEDRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQCADFFRGD NSEGVEARNEVAALAMEDMIAWMQEGGQVGIFDATNSTRQRRNMLMKMAEGKCKIIFLETLCNDRRIIERNIRLKIQQSPDYAEQPDFEAGYEDFKSRLE NYEKVYEPVEEGSYIKMIDMVTGKGGQIQVNNISGYLPGRIVFFLVNTHLTPRPILLTRHGESQDNLRGRIGGDSLLSDSGEIYAKKLSNFVEKRLKSEK AASIWTSTLQRTILTADPLAEFPKVQWRALDEINAGVCDGMTYEEIKKNMPEEYESRKKDKLRYRYPRGESYLDVIQRLEPVIIELERQRAPVVVISHQA VLRALYAYFADRPLKEIPHIEHILLFFFLRQQRQPPSGCIHLPPIGNPLRPPPPHLRQMVPLPPHEDHHCHHLLPHPPPYGGSEISWLPDGEESKNKTGG VVGQRHHHHHNQCVICLSGFGDGEVGRCLSGCGHGFHVECIDMWLLSHSSCPICRSPAAPLPLPLPPGAAVDSKAAGTEEEEEVAVLISSASGRSSSEAD EDDHRHHHDNVQCVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07110		FKFBP, ATF2KP, ...	"fructose-2,6-bisphosphatase",...		Lus10026380 [exp]	0	1
AT5G28770	bZIP	BZO2H3, ATBZIP6...	Arabidopsis thaliana basic leu...		Lus10015913 [exp]	3.3	0.8749
AT5G46190			RNA-binding KH domain-containi...		Lus10023300 [exp]	7.9	0.8421
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10009847 [exp]	8.5	0.8417
AT3G44900		ATCHX4	cation/H+ exchanger 4, cation/...		Lus10040963 [exp]	8.7	0.7883
AT5G22730			F-box/RNI-like/FBD-like domain...		Lus10027471 [exp]	9.4	0.8300
					Lus10015768 [exp]	11.0	0.7988
AT3G06660			PAPA-1-like family protein / z...		Lus10016899 [exp]	11.8	0.8233
AT4G34020		AtDJ1C	DJ-1 homolog C, Class I glutam...		Lus10019849 [exp]	12.7	0.8268
AT5G28770	bZIP	BZO2H3, ATBZIP6...	Arabidopsis thaliana basic leu...		Lus10006590 [exp]	12.8	0.8212
AT2G37678		PAT3, FRY1, FHY...	PHYTOCHROME A SIGNAL TRANSDUCT...		Lus10012123 [exp]	13.2	0.8322

Compare expression of checked genes

Lus10026380 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.