Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30100 553 / 0 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G10910 53 / 6e-07 EMB3103 EMBRYO DEFECTIVE 3103, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 52 / 2e-06 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G27420 50 / 2e-06 CNI1, ATL31 carbon/nitrogen insensitive 1 (.1) AT3G10910 48 / 3e-06 RING/U-box superfamily protein (.1) AT3G05200 50 / 4e-06 ATL6 RING/U-box superfamily protein (.1) AT5G01880 47 / 4e-06 RING/U-box superfamily protein (.1) AT5G05280 47 / 5e-06 RING/U-box superfamily protein (.1) AT5G10380 49 / 7e-06 ATRING1, RING1 RING/U-box superfamily protein (.1) AT1G72200 49 / 7e-06 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042274 [exp] 957 / 0 AT2G30100 578 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10042273 [exp] 212 / 2e-63 AT4G23350 104 / 2e-25 Protein of Unknown Function (DUF239) (.1) Lus10022223 [exp] 55 / 5e-08 AT1G23980 81 / 2e-17 RING/U-box superfamily protein (.1) Lus10008797 [exp] 51 / 7e-07 AT5G40250 77 / 2e-16 RING/U-box superfamily protein (.1) Lus10034953 [exp] 49 / 6e-06 AT2G20030 278 / 2e-90 RING/U-box superfamily protein (.1) Lus10031515 [exp] 49 / 9e-06 AT3G05200 232 / 1e-73 RING/U-box superfamily protein (.1) Lus10004460 [exp] 49 / 1e-05 AT3G05200 307 / 6e-102 RING/U-box superfamily protein (.1) Lus10012975 [exp] 49 / 1e-05 AT2G20030 291 / 2e-95 RING/U-box superfamily protein (.1) Lus10015167 [exp] 48 / 2e-05 AT3G05200 226 / 2e-71 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G075200 [exp] 678 / 0 AT2G30100 554 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.015G069100 [exp] 54 / 3e-07 AT1G74850 1268 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) Potri.013G025800 [exp] 51 / 1e-06 AT3G05200 261 / 9e-84 RING/U-box superfamily protein (.1) Potri.007G111900 [exp] 51 / 1e-06 AT4G33565 163 / 1e-46 RING/U-box superfamily protein (.1) Potri.005G036800 [exp] 50 / 3e-06 AT3G05200 261 / 7e-84 RING/U-box superfamily protein (.1) Potri.006G242200 [exp] 50 / 4e-06 AT1G62930 472 / 4e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G131400 [exp] 49 / 8e-06 AT1G09680 669 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G136200 [exp] 47 / 8e-06 AT3G10910 144 / 8e-44 RING/U-box superfamily protein (.1) Potri.001G159300 [exp] 47 / 8e-06 AT5G05280 134 / 3e-40 RING/U-box superfamily protein (.1) Potri.006G239500 [exp] 49 / 9e-06 AT2G20030 248 / 1e-78 RING/U-box superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026382 pacid=23156393 polypeptide=Lus10026382 locus=Lus10026382.g ID=Lus10026382.BGIv1.0 annot-version=v1.0 ATGTCAAACTCAATTGTCACAGAGGGTCCTTATGAGCAAGGAGACCAAATCCAATCCAATACGAAATATTTTCTCGTTGTTATCGCCCTGGTCATATCTT CTTTCGCTGTCGTCATATCTACTTTGTTGATCTGCAAACTAGTGAGATTCATCCGCGGCAACAACTGTCGTAAGTGGGCAGTGCGGCACCTTATCCCCAG CCTCCGACAAATGAGTTACAGGGACGCCACTGAGCTGATAGCCGGTCGGTTCGAAGCCACGCATTGCGCCTTGTGCCTCGACCCATTCGAGGATGAAGAA GAAACGGTGACGGTGCTGCCCGGTTGCAACCACATTTACCGTCCCAACTGTATAAGAGACTGGCTGCTCAAGAGCGCCAGGCTCCCGATTTCTCCAGGTA TGGCTTCCACTGCTCACAATTCTGTTGCTGCCATAACCAATTCCCGCTCATTCCACCAGAAGAATCGACTGCTTGTTGTTCAACCTTGTCAAATTTCTTG TATCAATCAACGCCCTAGGGCTTCCACCATAATATCATGTAGCAACCAAAACCCTAATTTTTCTGCTGCGAAGCCTAGTGGTAAGCCAGGAATTCGAGAG TTCCGGCTGCACGGCTCTGTAGAATTGGATAGGTTCGTAACGAGTGACGACGGGGACGAAATGAGCGAAGGGTTTTTCGAGGCGATAGAGGAACTGGAGA GAATGGCGAGAGAGCCATCCGACATTCTCGAAGAAATGAACGACAGGCTTTCGGCTAGGGAGTTGCAGTTGGTGCTGGTGTACTTCTCCCAGGAAGGGAG GGACTCGTGGTGTGCACTCGAGGTGTTCGAGTGGCTGCGAAAGGAGAATCGAGTCGATGAGGAGACGATGGAGCTTATGGTGGCCATAATGTGTGGGTGG GTTAGGAAGTTGATTGAAGGGAACCATGATGTCGGGGATTTGGTGGACTTGCTTGTGGATATGGATTGTGTTGGGTTGAAGCCTAGTTTTAGTATGATGG AGAAGGTTATATCTTTGTATTGGGAGATGGGGATGAAGGAGAGGGCTGTTTCGTTCGTGACCGAGGTTCTGAAGCGTGGGATTGCTTGTTCGGATGGCGA TGGGAGAGGCCAGAAAGGCGGTCCGACCGGGTACCTTGCTTGGAAGATGATGGCTAATGGAAACTACAGAGAAGCAGTAAGAACGGTCATTAACCTAAAA CAATCCGGATTAAAGCCAGAGGTATACGCCTACCTCATCGCAATGACAGCAGTAGTCAAAGAGCTAAATGAATTTGCCAAAGCCTTGCGCAAATTAAAAT CCTTTGCAAGGTCTGGCTCAGTAGTGGAGCTCGACACAGAAAGCGTGGAACTTTCCGAGAAATATCAATCAGAGCTTCTCGAAGACGGGGTGCGCCTATC TAAATGGGTGATTGAAGAAGCGGCAGATCACCCCTCACTCTCCGGTATAATCCACGAGCGGCTTCTCGCCATGTACATATGTGCTGGTCGAGGACTCGAA GCCGAGAGACAGCTGTGGGAAATGAAACTCGTCGGTAAAGAGCCCGACGCAGACCTCTACGACATGGTCCTAGCCATCTGCGCGTCGAAAAGAGAAGACG GCGCGATATCGCGACTGGTGTCGAGAGTGGACGTTATGAGCTCTCAGCGTAAGAAGAAGTCTCTGTCGTGGCTGCTGAGGGGGTACGTCAAGGGAGGCTA CTACGACGAGGCTGCGGAAGCTCTGACAAGGATGCTCGATCTGGGACTGTGTCCGGATTATATAGACCGGGTAGCGGTGGTGCAGGGACTTAGGAAAAGG ATCAAGAGATGGGAAGATGTGGAATCGTATATGAAGCTGTCCAAGCGGCTTTCGGATGCGAGTTTGATCGGACCGGCTCTTGTGTATCTGTATATGAAGA AGTACAAACTCTGGGTTTTGAAGATGCTTTAG
AA sequence Show only first row Show all	>Lus10026382 pacid=23156393 polypeptide=Lus10026382 locus=Lus10026382.g ID=Lus10026382.BGIv1.0 annot-version=v1.0 MSNSIVTEGPYEQGDQIQSNTKYFLVVIALVISSFAVVISTLLICKLVRFIRGNNCRKWAVRHLIPSLRQMSYRDATELIAGRFEATHCALCLDPFEDEE ETVTVLPGCNHIYRPNCIRDWLLKSARLPISPGMASTAHNSVAAITNSRSFHQKNRLLVVQPCQISCINQRPRASTIISCSNQNPNFSAAKPSGKPGIRE FRLHGSVELDRFVTSDDGDEMSEGFFEAIEELERMAREPSDILEEMNDRLSARELQLVLVYFSQEGRDSWCALEVFEWLRKENRVDEETMELMVAIMCGW VRKLIEGNHDVGDLVDLLVDMDCVGLKPSFSMMEKVISLYWEMGMKERAVSFVTEVLKRGIACSDGDGRGQKGGPTGYLAWKMMANGNYREAVRTVINLK QSGLKPEVYAYLIAMTAVVKELNEFAKALRKLKSFARSGSVVELDTESVELSEKYQSELLEDGVRLSKWVIEEAADHPSLSGIIHERLLAMYICAGRGLE AERQLWEMKLVGKEPDADLYDMVLAICASKREDGAISRLVSRVDVMSSQRKKKSLSWLLRGYVKGGYYDEAAEALTRMLDLGLCPDYIDRVAVVQGLRKR IKRWEDVESYMKLSKRLSDASLIGPALVYLYMKKYKLWVLKML

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30100			pentatricopeptide (PPR) repeat...		Lus10026382 [exp]	0	1
AT2G30100			pentatricopeptide (PPR) repeat...		Lus10042274 [exp]	2.2	0.9129
AT3G10420		SPD1	SEEDLING PLASTID DEVELOPMENT 1...		Lus10028811 [exp]	2.8	0.9070
AT4G33940			RING/U-box superfamily protein...		Lus10012062 [exp]	5.3	0.8840
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10024585 [exp]	5.5	0.8939
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10032223 [exp]	5.9	0.8851
AT5G53400		BOB1, BOBBER1	BOBBER1, HSP20-like chaperones...		Lus10018250 [exp]	6.9	0.8843
AT1G27480			alpha/beta-Hydrolases superfam...		Lus10018664 [exp]	9.9	0.8421
AT3G47420		AtG3Pp1, ATPS3	Glycerol-3-phosphate permease ...		Lus10027210 [exp]	10.6	0.8656
AT3G52060			Core-2/I-branching beta-1,6-N-...		Lus10008954 [exp]	11.3	0.8864
AT4G39090		EMB3005, RD19A,...	RESPONSIVE TO DEHYDRATION 19A,...		Lus10002103 [exp]	11.7	0.8628

Compare expression of checked genes

Lus10026382 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.