Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18390 310 / 2e-109 HAL, ARL2, TTN5, ATARLC1 TITAN 5, HALLIMASCH, ARF-LIKE 2, ADP-ribosylation factor family protein (.1) AT1G10630 150 / 3e-46 ATARFA1F ADP-ribosylation factor A1F (.1) AT5G14670 150 / 4e-46 ATARFA1B ADP-ribosylation factor A1B (.1) AT2G47170 149 / 4e-46 ARF1A1C, ARF1 Ras-related small GTP-binding family protein (.1) AT3G62290 148 / 1e-45 ATARFA1E ADP-ribosylation factor A1E (.1.2.3) AT2G24765 148 / 2e-45 ARF3, ARL1, ATARL1 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) AT1G23490 148 / 2e-45 ATARFA1A, ATARF1, ATARF ADP-RIBOSYLATION FACTOR 1A, ADP-ribosylation factor 1 (.1) AT1G70490 148 / 2e-45 ATARFA1D Ras-related small GTP-binding family protein (.1.2.3) AT2G15310 145 / 3e-44 ATARFB1A ADP-ribosylation factor B1A (.1) AT5G17060 145 / 4e-44 ATARFB1B ADP-ribosylation factor B1B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021092 [exp] 329 / 2e-110 AT3G58460 535 / 0.0 RHOMBOID-like protein 15 (.1.2) Lus10042271 [exp] 151 / 3e-47 AT2G18390 142 / 3e-44 TITAN 5, HALLIMASCH, ARF-LIKE 2, ADP-ribosylation factor family protein (.1) Lus10031436 [exp] 149 / 8e-46 AT5G14670 368 / 2e-132 ADP-ribosylation factor A1B (.1) Lus10030884 [exp] 149 / 1e-45 AT5G14670 371 / 4e-133 ADP-ribosylation factor A1B (.1) Lus10009571 [exp] 148 / 2e-45 AT5G17060 365 / 4e-131 ADP-ribosylation factor B1B (.1) Lus10002817 [exp] 147 / 4e-45 AT2G15310 273 / 1e-94 ADP-ribosylation factor B1A (.1) Lus10013021 [exp] 150 / 5e-45 AT5G14670 374 / 9e-133 ADP-ribosylation factor A1B (.1) Lus10001524 [exp] 148 / 6e-45 AT1G10630 372 / 3e-133 ADP-ribosylation factor A1F (.1) Lus10020392 [exp] 147 / 8e-45 AT5G17060 363 / 3e-130 ADP-ribosylation factor B1B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G024800 [exp] 323 / 1e-114 AT2G18390 326 / 1e-115 TITAN 5, HALLIMASCH, ARF-LIKE 2, ADP-ribosylation factor family protein (.1) Potri.008G100000 [exp] 153 / 2e-47 AT1G10630 366 / 1e-131 ADP-ribosylation factor A1F (.1) Potri.010G152600 [exp] 152 / 6e-47 AT1G10630 365 / 4e-131 ADP-ribosylation factor A1F (.1) Potri.018G013700 [exp] 151 / 7e-47 AT2G24765 336 / 6e-120 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) Potri.013G005500 [exp] 150 / 1e-46 AT5G14670 372 / 4e-134 ADP-ribosylation factor A1B (.1) Potri.006G267800 [exp] 150 / 2e-46 AT2G24765 333 / 8e-119 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) Potri.013G005600 [exp] 150 / 3e-46 AT1G10630 374 / 7e-135 ADP-ribosylation factor A1F (.1) Potri.005G007300 [exp] 150 / 3e-46 AT1G10630 374 / 7e-135 ADP-ribosylation factor A1F (.1) Potri.014G116500 [exp] 148 / 1e-45 AT1G10630 372 / 4e-134 ADP-ribosylation factor A1F (.1) Potri.002G191400 [exp] 148 / 1e-45 AT1G10630 372 / 4e-134 ADP-ribosylation factor A1F (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00025 [flax] [poplar] Arf ADP-ribosylation factor family
Representative CDS sequence Show only first row Show all	>Lus10026383 pacid=23156558 polypeptide=Lus10026383 locus=Lus10026383.g ID=Lus10026383.BGIv1.0 annot-version=v1.0 ATGGGGCTCCTCAGCATCATCCGCAAGATCAAGAGAAAAGAGAAGGAAATTCGTATTCTCATGGTCGGTCTGGACAACTCTGGAAAGACGACGATCGTTC TCAAGATCAACGGAGAAGACACCAGCGTCATCAGCCCAACCCTCGGCTTCAACATCAAAACCATCACTTACCACAAGTATATGCTGAACATATGGGACGT TGGTGGGCAAAGGACGATAAGATCCTACTGGAGAAACTACTTCGAGCAGACAGATGGGCTGGTCTGGGTTGTGGACAGTTCAGATCTCAGGAGGTTAGGC GATTGCAAGGCGGAGCTTGATAATCTGTTGAAGGAAGAGAGGTTATCTGGAGCTTCTTTGCTGATACTTGCTAATAAGCAAGACATAAAGGGAGCTCTTA CACCTGAAGAAATCGCCAAGGTACTGAACCTGGAGAACATGGATAGAACTAGGCATTGGAATATCGTTGGATGTAGTGCTTATACGGGTGAAGGGTTGCT TGATGCATTTGACTGGCTGGTTCAAGATATTGCCTCTCGTATCTATGTTCTGGACTAA
AA sequence Show only first row Show all	>Lus10026383 pacid=23156558 polypeptide=Lus10026383 locus=Lus10026383.g ID=Lus10026383.BGIv1.0 annot-version=v1.0 MGLLSIIRKIKRKEKEIRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYHKYMLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLG DCKAELDNLLKEERLSGASLLILANKQDIKGALTPEEIAKVLNLENMDRTRHWNIVGCSAYTGEGLLDAFDWLVQDIASRIYVLD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18390		HAL, ARL2, TTN5...	TITAN 5, HALLIMASCH, ARF-LIKE ...		Lus10026383 [exp]	0	1
AT2G32080		PUR ALPHA-1, PU...	purin-rich alpha 1 (.1.2)		Lus10001782 [exp]	1.0	0.9347
AT5G23540			Mov34/MPN/PAD-1 family protein...		Lus10035470 [exp]	3.2	0.9261
AT2G34520		RPS14	mitochondrial ribosomal protei...		Lus10034657 [exp]	3.5	0.9112
AT3G14470			NB-ARC domain-containing disea...		Lus10022792 [exp]	3.5	0.9344
AT1G27385			unknown protein		Lus10015781 [exp]	3.7	0.9216
AT1G20575		DPMS1	dolichol phosphate mannose syn...		Lus10030748 [exp]	4.4	0.9064
AT4G23885			unknown protein		Lus10001827 [exp]	5.1	0.9094
AT5G38660		APE1	acclimation of photosynthesis ...		Lus10034073 [exp]	5.2	0.9185
AT1G26870	NAC	FEZ, ANAC009	FEZ, Arabidopsis NAC domain co...		Lus10036749 [exp]	6.0	0.9291
AT3G55610		P5CS2	delta 1-pyrroline-5-carboxylat...		Lus10001016 [exp]	6.6	0.9122

Compare expression of checked genes

Lus10026383 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.