Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58490 533 / 0 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G02400 342 / 7e-118 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G51410 286 / 2e-95 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G19440 279 / 8e-93 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G15950 275 / 6e-91 IRX4, ATCCR1, CCR1 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) AT1G80820 263 / 2e-86 CCR2, ATCCR2 cinnamoyl coa reductase (.1) AT1G09480 262 / 9e-86 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09510 259 / 5e-85 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09490 251 / 7e-82 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G66800 248 / 9e-81 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042399 [exp] 311 / 2e-105 AT2G02400 457 / 7e-163 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026273 [exp] 308 / 5e-104 AT2G02400 461 / 2e-164 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10041651 [exp] 305 / 1e-102 AT1G15950 532 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Lus10024068 [exp] 303 / 1e-99 AT1G15950 534 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Lus10009955 [exp] 285 / 6e-95 AT1G51410 548 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10039595 [exp] 278 / 1e-92 AT5G19440 462 / 6e-165 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10030973 [exp] 274 / 1e-90 AT1G15950 457 / 1e-162 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Lus10035369 [exp] 273 / 4e-90 AT1G15950 456 / 6e-162 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Lus10008668 [exp] 257 / 3e-84 AT5G19440 388 / 9e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G076300 [exp] 553 / 0 AT5G58490 511 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G230900 [exp] 335 / 6e-115 AT2G02400 493 / 3e-177 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G256400 [exp] 288 / 1e-96 AT5G19440 552 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.003G181400 [exp] 286 / 2e-95 AT1G15950 503 / 1e-180 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.009G052000 [exp] 284 / 6e-95 AT1G51410 563 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G045000 [exp] 283 / 3e-94 AT1G15950 484 / 3e-173 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G046100 [exp] 283 / 5e-94 AT1G15950 511 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G046400 [exp] 282 / 5e-94 AT1G15950 510 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G045500 [exp] 281 / 2e-93 AT1G15950 505 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G045100 [exp] 278 / 2e-92 AT1G15950 483 / 9e-173 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10026385 pacid=23156444 polypeptide=Lus10026385 locus=Lus10026385.g ID=Lus10026385.BGIv1.0 annot-version=v1.0 ATGGATCGGCGACGAGAACCCGTCTGCGTAACCGGCGGAAGCGGCTGCATTGGCTCTTGGCTCGTCTCACTCCTTCTCGACCGCGGATACACTGTTCACG CTACTGTGAAAAACCTCAACGACGAGAAGGAAACGAAGCATCTGCGAGCTCTAGAAGGAGCAGAGACGCGCCTCCGCTTACACCAGATCGACCTCCTCGA TTACGATTCCATCGACGCCGCAATCGACGGCTGCGCTGGCGTCTTCCACCTCGCCTCTCCTTGCATCGTCGATCAAGTCCATGATCCTGAGAAGCAACTC CTGGATCCTGCAATCAAAGGGACGATGAACGTGTTGATGGCCTCGAAAGAGAAAGGCGTGAAGCGCGTGGTGGTGACTTCATCCATCTCCGCCATAACCC CAAGTCCGAATTGGCCAGCTGACGCTGTTAAGGCGGAGGATTGCTGGACTGACATCGAGTACTGTAAGCAGAAGGAATTATGGTATCCGCTATCTAAGAC ACTAGCTGAGAAAGCTGCGTGGGAGTTCTCCAAGGAGAAGGGCTTGGATGTGGTAGTGGTGAATCCCGGAACAGTCATGGGCCCTGCAATTCCTCCTACT CTAAATGCTAGCATGGTGATGCTTTTGCGGCTTCTCCAAGGTTGCACGGAGACATACCAGGACTTCTTCATGGGATCGGTCCATTTCAAAGATGTAGCTC TGGCACACATTATGGTGTACGAGAACCCATCAGCAGCTGGTCGACACTTGTGTGTAGTAGCCATATCTCATTACGGCGACTTTGTGGCGAAGGTCGCCGA GCTATATCCCGAGTATAATGTGCCAAGCTTGCCCAAGGACACACAGCCTGGGCTTCTAAGAGCGAAGAATGGCGCTCAGAAACTGATCGACATGGGTCTG AAGTTCATTCCCATGGAACAAATCATCAAGGATGGTGTCGAGTATCTCAAGGAAAAGAGCTACTTATCTTGA
AA sequence Show only first row Show all	>Lus10026385 pacid=23156444 polypeptide=Lus10026385 locus=Lus10026385.g ID=Lus10026385.BGIv1.0 annot-version=v1.0 MDRRREPVCVTGGSGCIGSWLVSLLLDRGYTVHATVKNLNDEKETKHLRALEGAETRLRLHQIDLLDYDSIDAAIDGCAGVFHLASPCIVDQVHDPEKQL LDPAIKGTMNVLMASKEKGVKRVVVTSSISAITPSPNWPADAVKAEDCWTDIEYCKQKELWYPLSKTLAEKAAWEFSKEKGLDVVVVNPGTVMGPAIPPT LNASMVMLLRLLQGCTETYQDFFMGSVHFKDVALAHIMVYENPSAAGRHLCVVAISHYGDFVAKVAELYPEYNVPSLPKDTQPGLLRAKNGAQKLIDMGL KFIPMEQIIKDGVEYLKEKSYLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58490			NAD(P)-binding Rossmann-fold s...		Lus10026385 [exp]	0	1
AT2G45490		ATAUR3	ataurora3 (.1)		Lus10020580 [exp]	3.6	0.8315
AT1G67590			Remorin family protein (.1.2)		Lus10036996 [exp]	6.6	0.7938
AT5G41050			Pollen Ole e 1 allergen and ex...		Lus10041541 [exp]	9.6	0.7834
AT1G19690			NAD(P)-binding Rossmann-fold s...		Lus10024280 [exp]	12.0	0.7650
AT4G01040			Glycosyl hydrolase superfamily...		Lus10005946 [exp]	14.1	0.7456
AT3G22630		PRCGB, PBD1	20S proteasome beta subunit D1...		Lus10039351 [exp]	14.5	0.7335
AT3G55000		TON1A	TONNEAU 1A, TONNEAU 1, tonneau...		Lus10001983 [exp]	15.2	0.7767
					Lus10000588 [exp]	15.3	0.7095
AT4G09550		ATGIP1	ARABIDOPSIS ATGCP3 INTERACTING...		Lus10018288 [exp]	15.6	0.6928
AT5G41050			Pollen Ole e 1 allergen and ex...		Lus10012553 [exp]	16.2	0.7552

Compare expression of checked genes

Lus10026385 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.