Plant FIBer expression Database

Lus10026386 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G10880 55 / 3e-08 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G130500
[exp]
77 / 5e-16 AT1G10880 67 / 2e-12 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
PFAM info
Representative CDS sequence
>Lus10026386 pacid=23156445 polypeptide=Lus10026386 locus=Lus10026386.g ID=Lus10026386.BGIv1.0 annot-version=v1.0
ATGGCTGCTGAACACGAGGCTGAGAGAATTCAATGCAAACTTGAGCATAGACAGAAAGACCGGGACGCAAAGCTCGAGACGTTGAAATGTCTGGATGGAC
GAGAGAGAGAAATCAGATCGCACATCATCCACAGAAAGGGGAGGTTCGATCTACTGCGACAATCCCTCGACAAGTTGAGTTTTGCAAATCAGGCTTACCG
GAATAGAAAGAGCATCAAGTCAAACACATTCGAAGATGAAACTCATTACCATGTAGTGAAAATCCGAATGCTACATGGAAAAAGGAAGAGCCTTGCAGAA
GAGAGGAGACTCTTGAGAGAGGCCAAGGCGCCATGTCGTAAGATCGATACCGGTTCATGCTCATCATTTGAAGCCCTCAATTCTCTTGTTGGTTTTTGTG
ATTCTCTTCTGACTTGTTTCCCAAGAAACCCCATTGTGGAGTTTGAGATTCTGAGTCTGTTTGATGTGTTACAGATTAAAGACATGAATTACAGTCTAGG
ATGCACCGTGTCGACCAACGAGAGGAATTTTCAGAAGCTGTTTGCTGTGGACTTGAAGAAGCTGGAAATGGAAAGGGAGACCGTTATTGCTAATGCTGCC
GTGAATGGAGAAATCTGGAGGTCTCTGGGTTCGAAGACAGACGTTCAAAGTGAAACCCAAGTTATAGGGAGGGAATATGAAGAAGCGAGGAAGGGATACT
TGGAAGTGAAGGCTGAGATTCGGCGAGTCCGGAGGGAATTGGAGCTTATCAAGGAAGAGATGAGCTACTTGCAGAAGCAGATGACGAAGTTGTGCAGCAC
AAGACTGAGGGAAGAAGGATGCCTGATTTACCCATCTTCCATTGTTATACTCTCAATCAGAGCATTTCAAACAAATAACTAG
AA sequence
>Lus10026386 pacid=23156445 polypeptide=Lus10026386 locus=Lus10026386.g ID=Lus10026386.BGIv1.0 annot-version=v1.0
MAAEHEAERIQCKLEHRQKDRDAKLETLKCLDGREREIRSHIIHRKGRFDLLRQSLDKLSFANQAYRNRKSIKSNTFEDETHYHVVKIRMLHGKRKSLAE
ERRLLREAKAPCRKIDTGSCSSFEALNSLVGFCDSLLTCFPRNPIVEFEILSLFDVLQIKDMNYSLGCTVSTNERNFQKLFAVDLKKLEMERETVIANAA
VNGEIWRSLGSKTDVQSETQVIGREYEEARKGYLEVKAEIRRVRRELELIKEEMSYLQKQMTKLCSTRLREEGCLIYPSSIVILSIRAFQTNN

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G10880 Core-2/I-branching beta-1,6-N-... Lus10026386
[exp]
0 1
AT2G42005 Transmembrane amino acid trans... Lus10026549
[exp]
3.5 0.9617
AT4G34180 Cyclase family protein (.1) Lus10001509
[exp]
8.5 0.9490
AT4G35350 XCP1 xylem cysteine peptidase 1 (.1... Lus10030722
[exp]
9.8 0.9515
AT2G44480 BGLU17 beta glucosidase 17 (.1.2) Lus10039541
[exp]
10.4 0.9460
AT5G48920 TED7 tracheary element differentiat... Lus10028626
[exp]
11.7 0.9505
AT4G32480 Protein of unknown function (D... Lus10039838
[exp]
12.8 0.9073
AT4G17220 ATMAP70-5 microtubule-associated protein... Lus10038790
[exp]
14.4 0.9396
AT1G05675 UDP-Glycosyltransferase superf... Lus10010468
[exp]
14.5 0.9338
AT4G10925 Nuclear transport factor 2 (NT... Lus10003192
[exp]
15.4 0.8160
Lus10018095
[exp]
15.7 0.9224

Lus10026386 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.